<div dir="ltr">Oups, sorry, I did not realize. How about a call with Zoom on Monday then? This way we'll be able to share screens. <div><br></div><div>Let me know what time works for you.</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Apr 12, 2019 at 3:30 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Hi Cécile,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
It's great we can look into this together but, as I am based in Boston, we would need to do it by video call<span style="color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt">. I don't remember exactly the time for LORIS
meeting, but I can make myself available anytime. Just let me know what works the best for you.</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt"><br>
</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt"><span title="Search for suggestions" style="margin:0px;font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255)">Thank
you</span><span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"> for quick reply and help.<span> </span></span><br>
</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt"><span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><span><br>
</span></span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Regards,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Alfredo.</div>
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<div id="gmail-m_3666360189568487001divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>><br>
<b>Sent:</b> Friday, April 12, 2019 2:19 PM<br>
<b>To:</b> Morales Pinzon, Alfredo<br>
<b>Cc:</b> <a href="mailto:loris-dev@bic.mni.mcgill.ca" target="_blank">loris-dev@bic.mni.mcgill.ca</a>; Sridar Narayanan, Dr.; Rozie Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann, Charles,M.D.<br>
<b>Subject:</b> Re: [Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.</font>
<div> </div>
</div>
<div>
<p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p>
<p></p>
<div dir="ltr">Hi again,
<div><br>
</div>
<div>Could we look into this issue together on Tuesday too? Not entirely sure why you get this error but we'll find out!!</div>
<div><br>
</div>
<div>Thanks!<br>
<br>
Cécile</div>
</div>
<br>
<div class="gmail-m_3666360189568487001x_gmail_quote">
<div dir="ltr" class="gmail-m_3666360189568487001x_gmail_attr">On Fri, Apr 12, 2019 at 11:55 AM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br>
</div>
<blockquote class="gmail-m_3666360189568487001x_gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Dear Cécile,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
I checked a couple of cases having this issue and they have the dicom field 0020,0032. Here is an example using dcmdump:</div>
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<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
(0020,0032) DS [-128.95269713082\-161.29539118652\87.7198252597444] # 50, 3 ImagePositionPatient<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Does this look good? Are there other field that I should check?</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Regards,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Alfredo.</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
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<div id="gmail-m_3666360189568487001x_gmail-m_-1258810262605359152appendonsend"></div>
<hr style="display:inline-block;width:98%">
<div id="gmail-m_3666360189568487001x_gmail-m_-1258810262605359152divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>><br>
<b>Sent:</b> Tuesday, April 9, 2019 10:05 AM<br>
<b>To:</b> Morales Pinzon, Alfredo<br>
<b>Cc:</b> <a href="mailto:loris-dev@bic.mni.mcgill.ca" target="_blank">loris-dev@bic.mni.mcgill.ca</a>; Sridar Narayanan, Dr.; Rozie Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann, Charles,M.D.<br>
<b>Subject:</b> Re: [Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.</font>
<div> </div>
</div>
<div>
<p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p>
<p></p>
<div dir="ltr">
<div dir="ltr">Hi Alfredo,
<div><br>
</div>
<div>I have a feeling you are encountering an issue that was fixed in release 20.2 of LORIS-MRI where DICOM files without the header (0020,0032) were automatically rejected by the script
<a href="http://get_dicom_info.pl" target="_blank">get_dicom_info.pl</a> with the error message saying that the file is not a DICOM, while it is actually a DICOM...</div>
<div><br>
</div>
<div>If you don't wish to upgrade your LORIS instance to 20.2 right away, you can take a look at the following PR that solved the issue: <a href="https://github.com/aces/Loris-MRI/pull/365" target="_blank">https://github.com/aces/Loris-MRI/pull/365</a> to implement
the fix.</div>
<div><br>
</div>
<div>Hope this helps! Let me know how it goes,</div>
<div><br>
</div>
<div>Cécile</div>
<div><br>
</div>
<div><br>
</div>
</div>
</div>
<br>
<div class="gmail-m_3666360189568487001x_gmail-m_-1258810262605359152x_gmail_quote">
<div dir="ltr" class="gmail-m_3666360189568487001x_gmail-m_-1258810262605359152x_gmail_attr">On Mon, Apr 8, 2019 at 6:02 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br>
</div>
<blockquote class="gmail-m_3666360189568487001x_gmail-m_-1258810262605359152x_gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Dear LoriDev team,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Out of 82 MRI sessions that I was uploading into LORIS, 15 could not be uploaded due to the following error:</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
---------------------------------------</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span>Running now the following command: /AAA/loris_data/BBB/bin/mri/uploadNeuroDB/<a href="http://imaging_upload_file.pl" target="_blank">imaging_upload_file.pl</a> -profile prod -upload_id 20844 /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz -verbose<br>
</span>
<div><br>
</div>
<div>/AAA/loris_data/IPMSA/bin/mri/dicom-archive/dicomTar.pl /tmp/ImagingUpload-9-29-1gMub2 /AAA/loris_data/BBB/data/tarchive -clobber -database -profile prod -verbose<br>
</div>
<div> Source: /tmp/ImagingUpload-9-29-1gMub2<br>
</div>
<div>Target: /AAA/loris_data/BBB/data/tarchive<br>
</div>
<div><br>
</div>
<div>Testing for database connectivity.<br>
</div>
<div>Database is available.<br>
</div>
<div><br>
</div>
<div> The target directory does not contain a single DICOM file.<br>
</div>
<div><br>
</div>
<span>The dicomtar execution has failed</span><br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline">---------------------------------------</span><br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><br>
</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline">I checked the file <span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline">/AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz
and it has dicom files in it. Is there something a need to double check?</span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><br>
</span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline">Best regards,</span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif;background-color:rgb(255,255,255);display:inline">Alfredo.</span></span></div>
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