From contact at hdfql.com  Tue Dec 12 10:10:10 2017
From: contact at hdfql.com (HDFql Contact)
Date: Tue, 12 Dec 2017 07:10:10 -0800
Subject: [MINC-users] An easier approach to HDF5 (HDFql)
Message-ID: <a3a0202a674af0106bdd4d09d4109549f71870fc@atmail.dreamhost.com>



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Links:
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[2] http://twitter.com/hdfql
[3] http://lists.hdfql.com/listinfo.cgi/hdfql-forum-hdfql.com


From sorench at gmail.com  Thu Dec 14 20:07:30 2017
From: sorench at gmail.com (Soren Christensen)
Date: Thu, 14 Dec 2017 17:07:30 -0800
Subject: [MINC-users] mincreshape segfault for certain choices of options
Message-ID: <CAHfsrRZSEzochqSPasOxwkO6TT-5gU7Jdi8KHfV8aOrOhrqqRw@mail.gmail.com>

Hi,
 Shouldn't this work (combining -dimsize and ydirection)
$ mincreshape -clobber   -ydirection  -float   a.mnc b.mnc
Copying
chunks:.....................................................................................................................................................................................Done.

mincreshape -clobber    -float -dimsize zspace=40  a.mnc b.mnc
Copying chunks:........................................Done.

mincreshape -clobber   -ydirection  -float -dimsize zspace=40  a.mnc b.mnc
Copying chunks:.......................................HDF5-DIAG: Error
detected in HDF5 (1.8.18) thread 0:
  #000: /home/sorenc/CODE/minc-toolkit-v2_build/HDF5/src/H5S.c line 431 in
H5Scopy(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
/home/sorenc/CODE/minc-toolkit-v2/libminc/libsrc/hdf_convenience.c:1616
(from miicv_get): Should not happen!
.Segmentation fault (core dumped)



Thanks!
Soren



$ mincreshape -version
program: 2.4.02
libminc: 2.4.02
netcdf : 4.3.3.1 of Dec  9 2017 15:29:26 $
HDF5   : 1.8.18

From bert at phalarope.com  Fri Dec 15 07:00:52 2017
From: bert at phalarope.com (Robert D. Vincent)
Date: Fri, 15 Dec 2017 07:00:52 -0500
Subject: [MINC-users] mincreshape segfault for certain choices of options
In-Reply-To: <CAHfsrRZSEzochqSPasOxwkO6TT-5gU7Jdi8KHfV8aOrOhrqqRw@mail.gmail.com>
References: <CAHfsrRZSEzochqSPasOxwkO6TT-5gU7Jdi8KHfV8aOrOhrqqRw@mail.gmail.com>
Message-ID: <CAAd5DeSK0OdMZ6mt1ztvh-kiQg6wW0zUDYyouqsG7V+nHmRwXw@mail.gmail.com>

Hi Soren,

Seems like a bug. Thanks for the report.

    -bert

On Thu, Dec 14, 2017 at 8:07 PM, Soren Christensen <sorench at gmail.com>
wrote:

> Hi,
>  Shouldn't this work (combining -dimsize and ydirection)
> $ mincreshape -clobber   -ydirection  -float   a.mnc b.mnc
> Copying
> chunks:.....................................................
> ............................................................
> ....................................................................Done.
>
> mincreshape -clobber    -float -dimsize zspace=40  a.mnc b.mnc
> Copying chunks:........................................Done.
>
> mincreshape -clobber   -ydirection  -float -dimsize zspace=40  a.mnc b.mnc
> Copying chunks:.......................................HDF5-DIAG: Error
> detected in HDF5 (1.8.18) thread 0:
>   #000: /home/sorenc/CODE/minc-toolkit-v2_build/HDF5/src/H5S.c line 431 in
> H5Scopy(): not a dataspace
>     major: Invalid arguments to routine
>     minor: Inappropriate type
> /home/sorenc/CODE/minc-toolkit-v2/libminc/libsrc/hdf_convenience.c:1616
> (from miicv_get): Should not happen!
> .Segmentation fault (core dumped)
>
>
>
> Thanks!
> Soren
>
>
>
> $ mincreshape -version
> program: 2.4.02
> libminc: 2.4.02
> netcdf : 4.3.3.1 of Dec  9 2017 15:29:26 $
> HDF5   : 1.8.18
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>