[MINC-users] Handling conversion from SPM "analyze" format?

[Andrew Janke]

Hi Gabriel,

If you call ana2mnc as spm2mnc (make a symlink) it will attempt to
make a MINC file with the correct orientation. There is also a spm2xfm
that will convert the .mat to a .xfm file. It uses mat1dump (something
I wrote in Perl many years ago).


a

On 18 May 2016 at 06:24, Gabriel A. Devenyi <gdevenyi at gmail.com> wrote:
> Hi minc-users,
>
> I've inherited some data I think was touched by SPM at some point, as I
> have a hdr/img/mat for each.
>
> Upon conversion (with ana2mnc) they're not oriented properly. I suspect I
> can rectify this with information in the .mat file?
>
> Does anyone know how I can do this with the minc tools? Or will I have to
> figure out something with SPM?
>
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> Affiliate, Department of Psychiatry
> McGill University
> t: 514.761.6131x4781
> e: gdevenyi at gmail.com
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