[MINC-users] new release of minc-toolkit

[Robert D. Vincent]

HI Jerome,

Not yet. The problem lies with the mincaverage function, I believe, but I
don't have a solution yet.

    -bert

On Thu, Mar 3, 2016 at 9:58 AM, Jérôme Redouté <redoute at cermep.fr> wrote:

> Hi Robert,
> Have you any news about this problem?
> Thanks
> Jerome
>
>
> Le 12/02/2016 15:28, Robert D. Vincent a écrit :
>
>> Hi Jérôme,
>>
>> Thank you for the report - I'll look into it.
>>
>>      -bert
>>
>> On Fri, Feb 12, 2016 at 4:39 AM, Jérôme Redouté <redoute at cermep.fr>
>> wrote:
>>
>> Thank you for this new release!
>>>
>>> I have a problem with the mnc2nii function:
>>>
>>> 1: convertion of Dynamic PET data from DICOM to MINC with dcm2mnc is OK
>>> 2: PET_DYN.mnc to PET_DYN.nii with mnc2nii is OK
>>>
>>> but
>>>
>>> if I make an average file of my PET_DYN with mincaverage -avgdim time
>>> and then
>>>
>>> mnc2nii PET_DYN_avg.mnc PET_DYN_avg.nii
>>>
>>> It crashes with:
>>>
>>> *** Error in `mnc2nii': munmap_chunk(): invalid pointer:
>>>
>>>> 0x000000000090cb50 ***
>>>>
>>>> thanks for your help
>>>
>>> Jerome
>>>
>>>
>>>
>>>
>>> Le 10/02/2016 17:18, Vladimir S. FONOV a écrit :
>>>
>>> Hello Everybody,
>>>>
>>>>
>>>> I made a new release of minc-toolkit, standard branch - version 1.0.08
>>>> and v2 branch - version 1.9.11.  It includes all the latest versions of
>>>> minc tools (as of 2nd of February 2016). V2 branch includes ITK 4.9
>>>> library
>>>> and latest versions of ANTs and Elastix. V2 branch now also includes
>>>> tools
>>>> for patch-based segmentations ( see
>>>> https://github.com/vfonov/patch_morphology ).
>>>>
>>>> MacOSX version was updated to work properly on 10.11 ( El Capitan).
>>>> Unfortunately I was not able to build v2 branch for older (10.7)
>>>> version,
>>>> so only the standard branch is available to folks who are stuck with old
>>>> version of MacOS X.
>>>>
>>>> All the binary packages are downloadable from
>>>>
>>>> http://www.bic.mni.mcgill.ca/ServicesSoftware/ServicesSoftwareMincToolKit
>>>>
>>>>
>>>> Note that web page http://www.mcgill.ca/bic/software/minc/minctoolkit
>>>> is
>>>> out of date!
>>>>
>>>>
>>> --
>>> ==================================================================
>>> Jérôme Redouté
>>> Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
>>> CERMEP - Imagerie du vivant
>>> 59 Bd Pinel. 69677 Bron - FRANCE
>>> tel : 33 (0)4 72 68 86 18 (bureau)
>>> tel : 33 (0)4 72 68 86 00 (standard)
>>> fax : 33 (0)4 72 68 86 10
>>> ==================================================================
>>>
>>>
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
>
> --
> ==================================================================
> Jérôme Redouté
> Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
> CERMEP - Imagerie du vivant
> 59 Bd Pinel. 69677 Bron - FRANCE
> tel : 33 (0)4 72 68 86 18 (bureau)
> tel : 33 (0)4 72 68 86 00 (standard)
> fax : 33 (0)4 72 68 86 10
> ==================================================================
>
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>