[MINC-users] Hyperintensities in T1 images

[Gabriel A. Devenyi]

Thanks Andrew,

I was investigating mincnorm, looks like I can do the same thing as with
-clamp, with the addition of rescaling the range.

I was intending to use mincmath -clamp by computing the -pctT from
mincstats anyways, is there any other cleverness going on that makes this
implementation different?

-- 
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
McGill University
t: 514.761.6131x4781
e: gdevenyi at gmail.com

On Wed, Mar 2, 2016 at 3:43 PM, Andrew Janke <a.janke at gmail.com> wrote:

> if they represent a small part of the image, have a try with mincnorm. it
> uses histogram pcts.
>
> a
> On 03/03/2016 5:26 AM, "Gabriel A. Devenyi" <gdevenyi at gmail.com> wrote:
>
> > Hi all,
> >
> > I'm working with some data where the scan range is very large, and fat
> > deposits (in the neck) or the subject's shoulders have far higher
> > intensities than the brain tissue.
> >
> > This breaks bestlinreg and similar "blur and register" types of methods.
> >
> > Can anyone recommend a way to "tamp down" these high intensity regions?
> > (Note, I already tried cropping and the image size variation makes this
> > tedious to do manually).
> >
> > Thanks!
> >
> > --
> > Gabriel A. Devenyi B.Eng. Ph.D.
> > Research Computing Associate
> > Computational Brain Anatomy Laboratory
> > Cerebral Imaging Center
> > Douglas Mental Health University Institute
> > McGill University
> > t: 514.761.6131x4781
> > e: gdevenyi at gmail.com
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
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