[MINC-users] information loss after mincreshape

[Jérôme Redouté]

Thank you!

I 'm going to test it right now

Best
Jerome

Le 30/06/2016 16:18, Robert D. Vincent a écrit :
> Hi Jerome,
>
> I believe I have fixed the issue. After thinking about it, I believe it is
> safe to preserve the information whenever it happens to be present, so that
> is now the behavior of mincreshape.
>
> I pushed the fix to the develop branch.
>
>      -bert
>
> On Mon, Jun 27, 2016 at 8:10 AM, Jérôme Redouté <redoute at cermep.fr> wrote:
>
>> Hi Robert,
>> did you find how to fix the mincreshape bug?
>> thank you
>> Best regards
>>
>> Jerome
>>
>> Le 15/06/2016 19:19, Robert D. Vincent a écrit :
>>
>>> One thing I'd like to check: is the file you're using a regularly-sampled
>>> file, i.e. is there a constant time duration for each image?
>>>
>>>
>>> On Wed, Jun 15, 2016 at 1:09 PM, Robert D. Vincent <
>>> robert.d.vincent at mcgill.ca> wrote:
>>>
>>> Hi Jérôme,
>>>> Thanks for the report, I've reproduced it here. It seems that mincreshape
>>>> fails to copy the time dimension properly. I will fix it as soon as
>>>> possible.
>>>>
>>>>       -bert
>>>>
>>>> On Wed, Jun 15, 2016 at 9:53 AM, Jérôme Redouté <redoute at cermep.fr>
>>>> wrote:
>>>>
>>>> Dear all,
>>>>> I'm processing dynamic PET data acquired on Siemens Biograph mMR.
>>>>>
>>>>> after conversion from DICOM to MINC using dcm2mnc, I can extract frames
>>>>> timings using:
>>>>>
>>>>> mincinfo -varvalue time xxx.mnc
>>>>>
>>>>> BUT,
>>>>>
>>>>> after mincreshape +xdirection +ydirection +zdirection xxx.mnc
>>>>> xxx_res.mnc
>>>>>
>>>>> mincinfo -varvalue time xxx_res.mnc outputs only "0"
>>>>>
>>>>> any ideas about this bug?
>>>>>
>>>>> Thanks
>>>>> Jerome
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> ==================================================================
>>>>> Jérôme Redouté
>>>>> Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
>>>>> CERMEP - Imagerie du vivant
>>>>> 59 Bd Pinel. 69677 Bron - FRANCE
>>>>> tel : 33 (0)4 72 68 86 18 (bureau)
>>>>> tel : 33 (0)4 72 68 86 00 (standard)
>>>>> fax : 33 (0)4 72 68 86 10
>>>>> ==================================================================
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> MINC-users at bic.mni.mcgill.ca
>>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>>
>>>>>
>>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>>
>> --
>> ==================================================================
>> Jérôme Redouté
>> Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
>> CERMEP - Imagerie du vivant
>> 59 Bd Pinel. 69677 Bron - FRANCE
>> tel : 33 (0)4 72 68 86 18 (bureau)
>> tel : 33 (0)4 72 68 86 00 (standard)
>> fax : 33 (0)4 72 68 86 10
>> ==================================================================
>>
>>
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>


-- 
==================================================================
Jérôme Redouté
Ph.D. - Ingénieur de Recherche - Université Claude Bernard - Lyon1
CERMEP - Imagerie du vivant
59 Bd Pinel. 69677 Bron - FRANCE
tel : 33 (0)4 72 68 86 18 (bureau)
tel : 33 (0)4 72 68 86 00 (standard)
fax : 33 (0)4 72 68 86 10
==================================================================