[MINC-users] nu_corrrect: bias files image

Gabriel A. Devenyi gdevenyi at gmail.com
Fri Jul 22 09:40:13 EDT 2016


N3BiasFieldCorrection from ANTs can save a bias field as part of its output
as well.

--
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
Affiliate, Department of Psychiatry
McGill University
t: 514.761.6131x4781
e: gdevenyi at gmail.com

On Fri, Jul 22, 2016 at 9:34 AM, Pedro <ptcougopinto at gmail.com> wrote:

> Got it. It would be interesting to have the -field option (as for
> nu_evaluate) for nu_correct.
>
> Thanks!
> Pedro
> > Em 22 de jul de 2016, à(s) 10:26, Alex Zijdenbos <zijdenbos at gmail.com>
> escreveu:
> >
> > Hi Pedro,
> >
> > Yes - nu_correct is just a wrapper around nu_estimate* and nu_evaluate.
> > If you call nu_correct with -mapping_dir, you can then use nu_evaluate to
> > convert the .imp file generated in that dir, into a volume.
> >
> > -- A
> >
> > On Fri, Jul 22, 2016 at 9:16 AM, Pedro <ptcougopinto at gmail.com> wrote:
> >
> >> Hi
> >>
> >> Is there a way to get an image of bias filed from nu_correct (or related
> >> scripts)?
> >>
> >> Pedro
> >>
> >>
> >>
> >> _______________________________________________
> >> MINC-users at bic.mni.mcgill.ca
> >> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >>
> >>
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
> _______________________________________________
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