[MINC-users] Segmentation on cygwin

Paul GRAVEL pgravel at bic.mni.mcgill.ca
Wed May 13 12:13:20 EDT 2015


Dear all,

I am trying to run the old segmentation pipeline, i.e. using:
1) mritotal (linear)
2) nu_estimate, nu_evaluate (or nu_correct)
3) mritotal (non_lin)
4) mincresample to STX
5) classify_clean
6) stx_segment

on my machine using cygwin (I know CIVET does great things, but I would 
like to be able to run a few segmentations locally).

However, I don't have the nu_estimate, nu_evaluate and/or nu_correct 
binaries, nor the one for classify_clean. So I was wondering if I could 
get them from somewhere, or at least the source (I checked on GitHub, but 
couldn't find anything).
Any ideas?

Many thanks!

Paul


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