[MINC-users] mincaverage error

[Robert D. Vincent]

Hi Simon,

It looks like HDF5 might be running out of resource ids, which seems
unlikely, but there could be a resource leak somewhere.

Can you give me the details of the failing case (e.g. the files you're
using)?

    -bert


On Mon, Jun 8, 2015 at 9:33 AM, Simon Eskildsen <eskild at gmail.com> wrote:

> Hi all,
>
> Averaging a bunch of deformation fields using mincaverage, I got this
> error:
>
> HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
>   #000: /users/fristed/git/minc-toolkit/build/HDF5/src/H5A.c line 679 in
> H5Aget_space(): can't get space ID of attribute
>     major: Invalid arguments to routine
>     minor: Can't get value
>   #001: /users/fristed/git/minc-toolkit/build/HDF5/src/H5Aint.c line 719 in
> H5A_get_space(): unable to register dataspace atom
>     major: Object atom
>     minor: Unable to register new atom
>   #002: /users/fristed/git/minc-toolkit/build/HDF5/src/H5I.c line 902 in
> H5I_register(): no IDs available in type
>     major: Object atom
>     minor: Out of IDs for group
> HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
>   #000: /users/fristed/git/minc-toolkit/build/HDF5/src/H5S.c line 1383 in
> H5Screate_simple(): unable to register dataspace ID
>     major: Object atom
>     minor: Unable to register new atom
>   #001: /users/fristed/git/minc-toolkit/build/HDF5/src/H5I.c line 902 in
> H5I_register(): no IDs available in type
>     major: Object atom
>     minor: Out of IDs for group
> (from miicv_get): Should not happen!
>
> Setting -debug flag does not provide further information.
>
> Ideas for debugging this are very welcome.
>
> Simon
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