[MINC-users] Building minc-toolkit-v2

[Andrew Wood]

Hi Bert,

I'm actually trying to find the right flags to get EZminc to build. I'm
specifically after the itk_convert_xfm tool.

Thanks,
Andrew

On Sat, Dec 19, 2015 at 8:31 AM, Robert D. Vincent <
robert.d.vincent at mcgill.ca> wrote:

> Hi Andrew,
>
> I encounter errors similar to yours when I enable MT_BUILD_ITK_TOOLS.  It
> works fine if just enable the visual tools.
>
>     -bert
>
> On Fri, Dec 18, 2015 at 10:12 PM, Andrew Wood <andrew at biospective.com>
> wrote:
>
> > Hi Bert,
> >
> > Here's my cmake command in a fresh build directory (my cmake version
> > 2.8.12.2 wasn't new enough, so I upgraded in /opt and called it directly
> -
> > any chance that's a problem):
> >
> > $ /opt/cmake/cmake-3.3.2-Linux-i386/bin/cmake
> > -DCMAKE_BUILD_TYPE:STRING=Release -DMT_BUILD_VISUAL_TOOLS:BOOL=ON
> > -DMT_BUILD_ITK_TOOLS:BOOL=ON ..
> >
> > - Andrew
> >
> > On Fri, Dec 18, 2015 at 8:55 PM, Robert D. Vincent <
> > robert.d.vincent at mcgill.ca> wrote:
> >
> > > Hi Andrew,
> > >
> > > I just checked out and built the master branch on Ubuntu 12.04, so
> there
> > > must be something in particular about your options or setup. Were you
> > > working from a clean build directory?
> > >
> > >     -bert
> > >
> > > On Fri, Dec 18, 2015 at 7:04 PM, Andrew Wood <andrew at biospective.com>
> > > wrote:
> > >
> > > > Hi all,
> > > >
> > > > I've been having trouble getting the master branch of minc-toolkit-v2
> > to
> > > > build. Here's my output:
> > > >
> > > > $ make
> > > > ...
> > > > [  9%] Built target minc_image_proc
> > > > make[5]: *** No rule to make target
> > > >
> > > >
> > >
> >
> `/data/RnD/Andrew/Src/minc-toolkit-v2/build_prod/external/usr/local/lib/libgsl.a',
> > > > needed by `mincnlm/minc_anlm'.  Stop.
> > > > make[4]: *** [mincnlm/CMakeFiles/minc_anlm.dir/all] Error 2
> > > > make[3]: *** [all] Error 2
> > > > make[2]: *** [EZMINC-prefix/src/EZMINC-stamp/EZMINC-build] Error 2
> > > > make[1]: *** [CMakeFiles/EZMINC.dir/all] Error 2
> > > > make: *** [all] Error 2
> > > >
> > > > I guess it's crashing when it goes looking for libgsl. It looks a
> > little
> > > > suspicious that my GSL build directory is empty:
> > > >
> > > > $ ls GSL/
> > > > # nothing
> > > >
> > > > I'm on Ubuntu 12.04. Does anyone have any idea about what I need to
> fix
> > > the
> > > > build?
> > > >
> > > > Thanks,
> > > > Andrew
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
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