[MINC-users] HOWTO: building and installing brain-view2 on Ubuntu 14.04.3

[Gabriel A. Devenyi]

And I made some mistakes cleaning up my script with copy/paste, sorry!

#!/bin/bashset -e
apt-get update
apt-get install -y build-essential gdebi-core git libcoin80-dev
qt4-qmake libqt4-dev libqt4-core libboost-dev autogen pkg-config
libtool libpcre++-dev gdb automake
cd ~
wget http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.10-20150710-Ubuntu_14.04-x86_64.deb

gdebi -n ~/minc-toolkit-1.9.10-20150710-Ubuntu_14.04-x86_64.deb
source /opt/minc-itk4/minc-toolkit-config.sh
#brain-view2 mess
mkdir ~/brain-view-buildcd ~/brain-view-build
#Install Quarter#Original source of Quarter is dead...
wget https://distfiles.macports.org/Quarter/Quarter-1.0.0.tar.gz

tar -xzf Quarter-1.0.0.tar.gzcd ~/brain-view-build/Quarter-1.0.0 &&
./configure --prefix=/opt/minc-itk4 && make && make install
#Install bicInventorcd ~/brain-view-build
#Cloning my patched version of bicInventor until pull-request to MNI
version is integrated
git clone https://github.com/gdevenyi/bicInventor.git
cd ~/brain-view-build/bicInventor && ./autogen.sh && ./configure
--prefix=/opt/minc-itk4 --with-build-path=/opt/minc-itk4 --with-minc2
&& make && make install
#Install brain-view2cd ~/brain-view-build

git clone https://github.com/sghanavati/brain-view2.gitcd
~/brain-view-build/brain-view2 && qmake MINCDIR=/opt/minc-itk4
HDF5DIR=/opt/minc-itk4 INVENTORDIR=/opt/minc-itk4
QUARTERDIR=/opt/minc-itk4   && make && cp brain-view2
/opt/minc-itk4/bin

​

-- 
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
McGill University
t: 514.761.6131x4781
e: gdevenyi at gmail.com

On Wed, Aug 26, 2015 at 7:10 PM, Gabriel A. Devenyi <gdevenyi at gmail.com>
wrote:

> Hi all,
>
> Since I’ve had many collaborators who’ve recently wanted to start using
> brain-view2 and found that it’s nearly impossible to install, I have
> documented a minimal set of steps to install brain-view2 on a *fresh*
> install of Ubuntu 14.04.3. This script makes no attempts to check anything.
> Hopefully you can adapt this to your own needs based on your system:
>
> This is designed to be run as root, so do sudo -i before running the
> script
>
> #!/bin/bashset -e
> apt-get update
> apt-get install -y build-essential gdebi-core git libcoin80-dev qt4-qmake libqt4-dev libqt4-core libboost-dev autogen pkg-config libtool libpcre++-dev gdb
> cd ~
> wget http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.10-20150710-Ubuntu_14.04-x86_64.deb
>
> gdebi -n ~/minc-toolkit-1.9.10-20150710-Ubuntu_14.04-x86_64.deb
> source /opt/minc-itk4/minc-toolkit-config.sh
> #brain-view2 mess
> mkdir ~/brain-view-buildcd ~/brain-view-build
> #Install Quarter#Original source of Quarter is dead...
> wget https://distfiles.macports.org/Quarter/Quarter-1.0.0.tar.gz
>
> tar -xzf Quarter-1.0.0.tar.gzcd ~/brain-view-build/Quarter-1.0.0 && ./configure && make && make install
> #Install bicInventor#Cloning my patched version of bicInventor until pull-request to MNI version is integrated
> git clone https://github.com/gdevenyi/bicInventor.git
> cd ~/brain-view-build/bicInventor && ./autogen.sh && ./configure --prefix=/opt/minc-itk4 --with-build-path=/opt/minc-itk4 --with-minc2 && make && make install
> #Install brain-view2
> git clone https://github.com/sghanavati/brain-view2.gitcd ~/brain-view-build/brain-view2 && qmake MINCDIR=/opt/minc-itk4 HDF5DIR=/opt/minc-itk4 && make && cp brain-view2 /opt/minc-itk4/bin
>
> ​
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> McGill University
> t: 514.761.6131x4781
> e: gdevenyi at gmail.com
>