[MINC-users] Determining DICOM Series File Members?

[Gabriel A. Devenyi]

I did want to know which series corresponds to T1 etc, turns out dicomsort
does that *and* sorts it into nice directories for me, which is very
convenient. The directories it creates are named the series name as well.

-- 
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
McGill University
t: 514.761.6131x4781
e: gdevenyi at gmail.com

On Wed, Aug 5, 2015 at 12:11 PM, Jon Pipitone <jon at pipitone.ca> wrote:

> Ah, I think I misunderstood. You don't want to determine whether a dicom
> is from a T1 or T2 or etc... just group together all of the dicoms from
> each series (or a specific series) by number?
>
> Jon.
>
> On 08/05, Gabriel A. Devenyi wrote:
> > Thanks for the quick replies!
> >
> > As is usually the case, I can across another Andrew Janke tool
> > https://github.com/andrewjanke/mnc2dcm
> >
> > dcmsort does exactly what i'm looking for
> >
> > --
> > Gabriel A. Devenyi B.Eng. Ph.D.
> > Research Computing Associate
> > Computational Brain Anatomy Laboratory
> > Cerebral Imaging Center
> > Douglas Mental Health University Institute
> > McGill University
> > t: 514.761.6131x4781
> > e: gdevenyi at gmail.com
> >
> > On Wed, Aug 5, 2015 at 11:51 AM, Andrew Wood <andrew at biospective.com>
> wrote:
> >
> > > Hi Gabriel,
> > >
> > > This is a pretty dumb way to do it, but here's what I run:
> > >
> > > $ dcmdump +P 0008,103e +F * | grep MySequenceName -B 1 | grep dcmdump
> | awk
> > > '{print $NF}'
> > >
> > > - Andrew
> > >
> > > On Wed, Aug 5, 2015 at 11:49 AM, Jon Pipitone <jon at pipitone.ca> wrote:
> > >
> > > > We've been dealing with this in a pretty stupid but functional way:
> > > > regexs on the StudyDescription field. The descriptions varies from
> > > > scanner to scanner, and tech to tech, of course, so you have to tweak
> > > > your library of regexs as you encounter new data but, you know, it
> > > > works. :-)
> > > >
> > > > pydicom is your friend for this.
> > > >
> > > > Jon.
> > > >
> > > > On 08/05, Gabriel A. Devenyi wrote:
> > > > > Hi all,
> > > > >
> > > > > If I have a large collection of DICOM files from a single scanning
> > > > session
> > > > > (~1000 files), does anyone know of a way to pick out the files of a
> > > > > specific series? i.e. I have a bunch of scan types and I want to
> know
> > > > which
> > > > > files are the DICOMs for T1s?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > --
> > > > > Gabriel A. Devenyi B.Eng. Ph.D.
> > > > > Research Computing Associate
> > > > > Computational Brain Anatomy Laboratory
> > > > > Cerebral Imaging Center
> > > > > Douglas Mental Health University Institute
> > > > > McGill University
> > > > > t: 514.761.6131x4781
> > > > > e: gdevenyi at gmail.com
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