From a.janke at gmail.com Thu Oct 16 19:05:08 2014 From: a.janke at gmail.com (Andrew Janke) Date: Fri, 17 Oct 2014 09:05:08 +1000 Subject: [MINC-users] Fwd: MINC Display Question In-Reply-To: References: Message-ID: Hi all, See email from Ali below, I am seeing increasing numbers of this bug being reported for OSX users, it appears to be the version of GLUT on later OSX installs. Have others seen this and found a cure yet? The only fix I have found it to regress the version of GLUT on OSX, this is a pain though as you have to compile it yourself. Sadly my mac doesn't seem affected so it's not an itch I have to personally scratch. Thanks a ---------- Forwarded message ---------- From: Ali Snedden Date: 16 October 2014 23:19 Subject: Fwd: MINC Display Question To: Andrew Janke ---------- Forwarded message ---------- From: Ali Snedden Date: Tue, Sep 30, 2014 at 11:32 AM Subject: MINC Display Question To: david at bic.mni.mcgill.ca Hello, I am trying to use Display-1.6.0 on Mac OSX 10.9.5. I downloaded binaries from http://packages.bic.mni.mcgill.ca/minc-toolkit/MacOSX/ . I previously used Display-1.4.2 on Mac OSX 10.6.8. It appears that the newer version of Display doesn't change the color of voxels incrementally corresponding to the voxel values. It looks like there are really only 6 or 7 discrete colors. Question: Is there a way to get the version 1.6.0 to display relatively smooth color transitions like version 1.4.2 did? Attached is two images of the same file using the two different versions of Display Thank you for your time. Best regards, Ali From vladimir.fonov at gmail.com Fri Oct 17 08:31:33 2014 From: vladimir.fonov at gmail.com (Vladimir S. FONOV) Date: Fri, 17 Oct 2014 08:31:33 -0400 Subject: [MINC-users] Fwd: MINC Display Question In-Reply-To: References: Message-ID: Is he using minc files stored as floats , with intensity range close to 0-1 ? On Thu, Oct 16, 2014 at 7:05 PM, Andrew Janke wrote: > Hi all, > > See email from Ali below, I am seeing increasing numbers of this bug > being reported for OSX users, it appears to be the version of GLUT on > later OSX installs. Have others seen this and found a cure yet? The > only fix I have found it to regress the version of GLUT on OSX, this > is a pain though as you have to compile it yourself. > > Sadly my mac doesn't seem affected so it's not an itch I have to > personally scratch. > > Thanks > > > a > > > > ---------- Forwarded message ---------- > From: Ali Snedden > Date: 16 October 2014 23:19 > Subject: Fwd: MINC Display Question > To: Andrew Janke > > > > ---------- Forwarded message ---------- > From: Ali Snedden > Date: Tue, Sep 30, 2014 at 11:32 AM > Subject: MINC Display Question > To: david at bic.mni.mcgill.ca > > > Hello, > > I am trying to use Display-1.6.0 on Mac OSX 10.9.5. I downloaded > binaries from http://packages.bic.mni.mcgill.ca/minc-toolkit/MacOSX/ . > > I previously used Display-1.4.2 on Mac OSX 10.6.8. It appears that > the newer version of Display doesn't change the color of voxels > incrementally corresponding to the voxel values. It looks like there > are really only 6 or 7 discrete colors. > > Question: Is there a way to get the version 1.6.0 to display > relatively smooth color transitions like version 1.4.2 did? > > Attached is two images of the same file using the two different > versions of Display > > > Thank you for your time. > > Best regards, > Ali > > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > -- Best regards, Vladimir S. Fonov ~ vladimir fonov gmail com From bert at bic.mni.mcgill.ca Fri Oct 17 10:53:28 2014 From: bert at bic.mni.mcgill.ca (Robert VINCENT) Date: Fri, 17 Oct 2014 10:53:28 -0400 (EDT) Subject: [MINC-users] Fwd: MINC Display Question In-Reply-To: References: Message-ID: Hi Andrew, Feel free to direct Ali to me. I have no idea what is going on, but I'll try to look into it. -bert On Fri, 17 Oct 2014, Andrew Janke wrote: > Hi all, > > See email from Ali below, I am seeing increasing numbers of this bug > being reported for OSX users, it appears to be the version of GLUT on > later OSX installs. Have others seen this and found a cure yet? The > only fix I have found it to regress the version of GLUT on OSX, this > is a pain though as you have to compile it yourself. > > Sadly my mac doesn't seem affected so it's not an itch I have to > personally scratch. > > Thanks > > > a > > > > ---------- Forwarded message ---------- > From: Ali Snedden > Date: 16 October 2014 23:19 > Subject: Fwd: MINC Display Question > To: Andrew Janke > > > > ---------- Forwarded message ---------- > From: Ali Snedden > Date: Tue, Sep 30, 2014 at 11:32 AM > Subject: MINC Display Question > To: david at bic.mni.mcgill.ca > > > Hello, > > I am trying to use Display-1.6.0 on Mac OSX 10.9.5. I downloaded > binaries from http://packages.bic.mni.mcgill.ca/minc-toolkit/MacOSX/ . > > I previously used Display-1.4.2 on Mac OSX 10.6.8. It appears that > the newer version of Display doesn't change the color of voxels > incrementally corresponding to the voxel values. It looks like there > are really only 6 or 7 discrete colors. > > Question: Is there a way to get the version 1.6.0 to display > relatively smooth color transitions like version 1.4.2 did? > > Attached is two images of the same file using the two different > versions of Display > > > Thank you for your time. > > Best regards, > Ali > From pierre.bellec at criugm.qc.ca Thu Oct 23 12:11:29 2014 From: pierre.bellec at criugm.qc.ca (Pierre Bellec) Date: Thu, 23 Oct 2014 12:11:29 -0400 Subject: [MINC-users] minc-toolkit 1.9.2 on Ubuntu 14.04 Message-ID: Dear minc-users, I am installing minc-toolkit 1.9.2 on ubuntu 14.04. The package manager is complaining with: Lintian check results for /home/pbellec/Desktop/minc-toolkit-1.9.2-20140730-Ubuntu_14.04-x86_64.deb: E: minc-toolkit-itk4: control-file-has-bad-permissions md5sums 0664 != 0644 I can choose to ignore and everything runs fine. Also, it is still necessary to manually source the config file to access the tool. That's not standard in debian packages, which generally take care of that themselves. Thanks as usual for the great work, I've once again installed all the minc world in a matter of minutes. Best, Pierre