[MINC-users] SOLVED: pyminc problem getting dimension sizes

[Thomas Funck]

Fixed my problem.  Just had to change  <int_sizes = c_ulonglong * 5>  to <int_sizes = c_unit * 5> in libpyminc2.py

Thomas

________________________________________
From: Thomas Funck
Sent: Wednesday, March 05, 2014 1:38 PM
To: minc-users at bic.mni.mcgill.ca
Subject: pyminc problem getting dimension sizes

Hi again,

I'm trying to read in a minc file (minc 2, float) with pyminc, but I'm getting issues with the sizes of the dimensions. Using "libminc.miget_volumes_sizes" in volumes.py I get dimensions of [932007903413L, 181L, 0L]  instead of of [181, 217, 181]  (which is what mincinfo gives me) . There appears to have been earlier issues (https://github.com/mcvaneede/pyminc/pull/5) with a discrepancy between the data type used in libpyminc2.py and minc-2.2. I tried changing "misize_t" in libpyminc2.py to c_uint, c_ulong from the default of c_ulonglong, but to no avail.

Thanks again for any help!

Thomas


________________________________________
From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] on behalf of minc-users-request at bic.mni.mcgill.ca [minc-users-request at bic.mni.mcgill.ca]
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Subject: MINC-users Digest, Vol 104, Issue 2

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Today's Topics:

   1. Shared minc libraries on BIC server (Thomas Funck)
   2. Re: Shared minc libraries on BIC server (Vladimir S. FONOV)


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Message: 1
Date: Tue, 4 Mar 2014 22:16:17 +0000
From: Thomas Funck <thomas.funck at mail.mcgill.ca>
To: "minc-users at bic.mni.mcgill.ca" <minc-users at bic.mni.mcgill.ca>
Subject: [MINC-users] Shared minc libraries on BIC server
Message-ID:
        <53F3FD0032C9CC4BA836E8F0FC289065317BF46E at EXMBX2010-3.campus.MCGILL.CA>

Content-Type: text/plain; charset="us-ascii"

Hi,

I want to use pyminc, but I can't seem locate shared minc libraries on the BIC server. Do you I just need to recompile minc on my own terminal with the "--enable=shared" flag or there some way around this (maybe using pyminc with static libraries)?

Thanks,

Thomas

------------------------------

Message: 2
Date: Tue, 04 Mar 2014 17:28:02 -0500
From: "Vladimir S. FONOV" <vladimir.fonov at gmail.com>
To: minc-users at bic.mni.mcgill.ca
Subject: Re: [MINC-users] Shared minc libraries on BIC server
Message-ID: <53165372.1080909 at gmail.com>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Hello,


I prefer compiling it all statically to avoid conflicts between
different versions of minc, HDF5 and NETCDF which are floating around.

If you decide to build latest minc yourself , then I suggest using cmake
to build it.


On 14-03-04 05:16 PM, Thomas Funck wrote:
> I want to use pyminc, but I can't seem locate shared minc libraries on the BIC server. Do you I just need to recompile minc on my own terminal with the "--enable=shared" flag or there some way around this (maybe using pyminc with static libraries)?
>
> Thanks,


--
Best regards,

  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com


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