[MINC-users] mritotal

[Alex Zijdenbos]

Hi Ayman,

This is really a generic unix question, not specific to MINC; but the
simplest way to do this is to just use a command line 'for' loop. You can
do that in any number of ways, but one would be:

for f in *mnc; do xfm=`basename $f .mnc`.xfm; mritotal $f $xfm; done

That will run them in sequence; if you want to submit them to SGE or some
such, you could for example put Andrew Janke's qbatch in from of mritotal
(assuming that is available on the system you are working on).

-- A



On Wed, Mar 5, 2014 at 1:34 PM, Ayman Oweida <ayman.oweida at mail.mcgill.ca>wrote:

>
> I would like to execute the command mritotal from MNI_Autoreg to multiple
> files.
> I'm currently using it file by file.  Is there a script or command to use
> for applying mritotal to multiple files?
>
> Thank you,
> Ayman
> McGill University
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