[MINC-users] Build error

[Andrew Janke]

Hi Tanweer

This looks to be an error in the POD documentation of the perl script
mincpik, I had thought this was fixed in later version of MINC. Are
you building from a git download or from packages.bic.mni.mcgill.ca?


a



On 13 June 2014 04:11, Tanweer Rashid <trash001 at odu.edu> wrote:
> Hi all,
>
> I am trying to build minc 2.2.00 from source on 64-bit Ubuntu 14.04. I keep
> getting the following error message
>
>
> /bin/bash ./libtool --tag=CC   --mode=link gcc  -g -O2   -o vff2mnc
> conversion/vff2mnc/vff2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz
> -lnetcdf -lm
> libtool: link: gcc -g -O2 -o .libs/vff2mnc conversion/vff2mnc/vff2mnc.o
>  ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm
> depbase=`echo progs/mincexample/mincexample1.o | sed
> 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include
> -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2
>    -g -O2 -MT progs/mincexample/mincexample1.o -MD -MP -MF $depbase.Tpo -c
> -o progs/mincexample/mincexample1.o progs/mincexample/mincexample1.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/bash ./libtool --tag=CC   --mode=link gcc  -g -O2   -o mincexample1
> progs/mincexample/mincexample1.o libvolume_io2.la libminc2.la -lhdf5 -lz
> -lnetcdf -lm
> libtool: link: gcc -g -O2 -o .libs/mincexample1
> progs/mincexample/mincexample1.o  ./.libs/libvolume_io2.so
> ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm
> depbase=`echo progs/mincexample/mincexample2.o | sed
> 's|[^/]*$|.deps/&|;s|\.o$||'`;\
> gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include
> -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2
>    -g -O2 -MT progs/mincexample/mincexample2.o -MD -MP -MF $depbase.Tpo -c
> -o progs/mincexample/mincexample2.o progs/mincexample/mincexample2.c &&\
> mv -f $depbase.Tpo $depbase.Po
> /bin/bash ./libtool --tag=CC   --mode=link gcc  -g -O2   -o mincexample2
> progs/mincexample/mincexample2.o libvolume_io2.la libminc2.la -lhdf5 -lz
> -lnetcdf -lm
> libtool: link: gcc -g -O2 -o .libs/mincexample2
> progs/mincexample/mincexample2.o  ./.libs/libvolume_io2.so
> ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm
> /usr/bin/pod2man --section=1 progs/minccomplete/minccomplete >
> progs/minccomplete/minccomplete.man1
> /usr/bin/pod2man --section=1 progs/minchistory/minchistory >
> progs/minchistory/minchistory.man1
> /usr/bin/pod2man --section=1 progs/mincpik/mincpik >
> progs/mincpik/mincpik.man1
> progs/mincpik/mincpik around line 580: You forgot a '=back' before '=head3'
> progs/mincpik/mincpik around line 582: '=item' outside of any '=over'
> progs/mincpik/mincpik around line 599: You forgot a '=back' before '=head3'
> progs/mincpik/mincpik around line 601: '=item' outside of any '=over'
> progs/mincpik/mincpik around line 618: You forgot a '=back' before '=head3'
> progs/mincpik/mincpik around line 620: '=item' outside of any '=over'
> POD document had syntax errors at /usr/bin/pod2man line 71.
> make[2]: *** [progs/mincpik/mincpik.man1] Error 255
> make[2]: Leaving directory `/home/trash001/Downloads/minc-2.2.00'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/trash001/Downloads/minc-2.2.00'
> make: *** [all] Error 2
>
>
>
> Any help is appreciated.
>
> Thanks and regards,
> --
> Tanweer Rashid
> MSVE Dept.
> Old Dominion University
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users