[MINC-users] Building bicpl-1.6.4 on Ubuntu 12.04

[Andrew Janke]

Hi Andrew,

No you haven't made a mistake with the configure args. It's a
shortcoming of how libtool is handled in the old MINC build system for
binary packages packages.

If you build MINC from source (any release) or use any of the later
packages (mni-toolkit) you shouldn't see this problem.

In any case I'd recommend shifting to Vlad's new CMake build system
for MINC as very little of the old autoconf/make code will now be kept
up to date.

ta


a


On 4 June 2014 06:53, Andrew Wood <andrew at biospective.com> wrote:
> Hi all,
>
> I'm trying to build bicpl-1.6.4 on Ubuntu 12.04 and am having some trouble.
>
> Here's my configure command:
> ./configure --with-minc2 --with-build-path=/usr/local/bic/ --with-image-ppm
>
> Everything goes well until the Testing/ subdirectory, where I get this:
>
> gcc -g -O2 -o test_rgb_io test_rgb_io.o  -L/usr/local/bic//lib
> ../.libs/libbicpl.a -lppm -lvolume_io2 -lminc2 /usr/lib/libhdf5.so
> -lpthread -lz -lnetcdf -lm
> /usr/bin/ld: ../.libs/libbicpl.a(rgb_io.o): undefined reference to symbol
> 'pm_freerow'
> /usr/bin/ld: note: 'pm_freerow' is defined in DSO /usr/lib64/libpbm.so.9 so
> try adding it to the linker command line
> /usr/lib64/libpbm.so.9: could not read symbols: Invalid operation
>
>
> Manually running the gcc command with "-lpbm" at the end, as suggested by
> the prompt, works fine. Is there a good reason that the build system isn't
> passing along the linker flags? Have I made a mistake with the configure
> args?
>
> Thanks,
> Andrew
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
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