[MINC-users] Error with nu_correct tool

[Vladimir S. FONOV]

Hello,

so, what happens when you run make test ? 

On Apr 24, 2014, at 1:20 PM, Vikash Gupta <vikash.gupta at inria.fr> wrote:

> Hi,
> Yes I just did that and I get exactly the same error.
> I am attaching the CMakeCache.txt with the email, in case you want to have a
> look at certain flags..
> 
> Thanks a lot
> Vikash
> 
> ----- Original Message -----
>> From: "Vikash Gupta" <vikash.gupta at inria.fr>
>> To: "MINC users mailing list" <minc-users at bic.mni.mcgill.ca>
>> Sent: Thursday, April 24, 2014 7:15:29 PM
>> Subject: Re: [MINC-users] Error with nu_correct tool
>> 
>> Hi,
>> Yes I just did that and I get exactly the same error.
>> 
>> 
>> I am attaching the CMakeCache.txt with the email, in case you want to have a
>> look at certain flags..
>> 
>> 
>> Thanks a lot
>> Vikash
>> 
>> ----- Original Message -----
>>> From: "Vladimir S. FONOV" <vladimir.fonov at gmail.com>
>>> To: "MINC list" <minc-users at bic.mni.mcgill.ca>
>>> Sent: Thursday, April 24, 2014 7:00:30 PM
>>> Subject: Re: [MINC-users] Error with nu_correct tool
>>> 
>>> Hello,
>>> 
>>> I suggest using minc-toolkit :
>>> http://www.bic.mni.mcgill.ca/ServicesSoftware/ServicesSoftwareMincToolKit
>>> 
>>> Or https://github.com/BIC-MNI/minc-toolkit if you want to complete from
>>> source
>>> 
>>> Best regards,
>>> Vladimir S. Fonov ~ sent from my smartphone
>>> On Apr 24, 2014 12:38 PM, "Vikash Gupta" <vikash.gupta at inria.fr> wrote:
>>> 
>>>> 
>>>> 
>>>> Hi MINC-Users,
>>>> 
>>>> I am trying to use the nu_correct tool and I get this error,
>>>> 
>>>> 
>>>> 
>>>> 
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 165.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 170.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 211.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1033.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1036.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1433.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1439.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1441.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1465.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1617.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1619.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1621.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1623.
>>>> (Maybe you should just omit the defined()?)
>>>> defined(@array) is deprecated at /usr/local/bin/nu_estimate_np_and_em
>>>> line
>>>> 1625.
>>>> (Maybe you should just omit the defined()?)
>>>> /usr/local/bin/volume_stats: error while loading shared libraries:
>>>> libvolume_io2.so.3: cannot open shared object file: No such file or
>>>> directory
>>>> nu_estimate_np_and_em: crashed while running volume_stats (termination
>>>> status=32512)
>>>> nu_correct: crashed while running nu_estimate_np_and_em (termination
>>>> status=32512)
>>>> 
>>>> 
>>>> I tried to look for the files libvolume_io2.so.3 This is not present in
>>>> the /usr/local/bin/volume_stats
>>>> I have pre installed minc-2.2.00 and the N3 library from the git
>>>> repository.
>>>> 
>>>> ANy help would be really good
>>>> 
>>>> Thanks
>>>> Vikash
>>>> _______________________________________________
>>>> MINC-users at bic.mni.mcgill.ca
>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>> 
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>> 
> <CMakeCache.txt>_______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users

---
Best regards,

Vladimir S. FONOV ~ v.s.fonov <at> ilmarin.info