[MINC-users] Lobe atlas of ICBM 2009 brain atlas

[LU, Huan Xiang HX]

Hi Vladimir,

Thanks for your reply.

In fact, I tried to use the lobe_segment script. But it requires two xfm files which I couldn't locate in the MINC files.
Usage: lobe_segment.pl [options] to_model_nl.xfm to_tal.xfm class.mnc out_labels.mnc

Do you have idea how to use this script?

Many thanks and best regards,
Huanxiang

-----Original Message-----
From: minc-users-bounces at bic.mni.mcgill.ca [mailto:minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Vladimir S. FONOV
Sent: 2014年4月11日 21:45
To: MINC list
Subject: Re: [MINC-users] Lobe atlas of ICBM 2009 brain atlas

Hello,

the lobe atlas is included in symmetric version of ICBM2009 atlas, only in MINC1 and MINC2 format. It is meant to be used with lobe_segment script from minc-toolkit ( there are separate atlases for grey and white matter structures).


On Apr 10, 2014, at 9:29 PM, LU, Huan Xiang HX <huanxiang.lu at philips.com> wrote:

> Hello,
>
> I was trying to use the lobe atlas that is claimed to be included in the ICBM 2009 atlas. However, I could not find the lobe segmentation atlas from the downloaded zip files (I downloaded all three zip files of ICBM 2009c). Does anyone know how to acquire this lobe atlas?

---
Best regards,

Vladimir S. FONOV ~ v.s.fonov <at> ilmarin.info





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