[MINC-users] brain-view 0.8 on Ubuntu precise ...

[Sylvain Milot]

Good morning,

so as Claude said, appending -lQt3Support at the end
of the link line worked for brain-view and gcc 4.6.

using libnetpbm10-dev under Ubuntu precise breaks things
for some reason but libnetpbm9-dev works. Packages affected
here are bicpl, conglomerate and likely Display as well.

I also tried with gcc version 4.4 (instead of 4.6) and that
worked as well.

Thanks to all!

Sylvain

On Tue, 16 Apr 2013, Claude LEPAGE wrote:

> Hi all,
>
> Sylvain gave me access to a Ubuntu precise machine and I managed
> to link brain-view-0.8.0. Some notes (features/bugs):
> - I had to repeat the link by appending -lQt3Support at the end
>  of the link line. This is gcc 4.6. Maybe the order in which
>  -lQt3Support is listed matters for this compiler. A mystery...
>  Try with an old compiler???
> - I had to set the proper include path for Qt4 (not the one below),
>  but that's a minor detail.
> - the configure skips the check for BicInventor (and oobicpl).
>  I don't know why. Maybe I have to re-run autogen.sh to upgrade
>  the building scripts to the version of autoconf on the system.
>  Maybe fixing this check for BicInventor will fix the link problem.
>
> Anyway, it linked.
>
> Claude
>
>> has anyone successfuly compiled brain-view (version 0.8) on Ubuntu precise =
>> ?
>>
>> I get some undefined references at load time, here's the top of
>> the list:
>>
>> g++  -DQT3_SUPPORT  -lQt3Support -L/data/software/BIC/Build/Minc-2/Ubuntu-1=
>> 2.04/install//usr/local/bic/lib  -L/usr/lib -Wl,-Bsymbolic-functions -Wl,-z=
>> ,relro -L/usr/share/qt4/lib  -o brain-view  brain-view.o callbacks.o pointI=
>> nfoWindow.o pointPicker.o brainApp.o brainWidget.o vertStatsFileDialog.o br=
>> ainEnvironment.o vertstatsForm.o vertexInfo.o screenCaptureForm.o screenCap=
>> ture.o optionsForm.o options.o rplotformbase.o anatconForm.o anatcon.o RPlo=
>> t.o extselection.o Rinterface.o pointInfoWindow.moc.o pointPicker.moc.o bra=
>> inApp.moc.o brainWidget.moc.o vertstatsForm.moc.o vertexInfo.moc.o screenCa=
>> ptureForm.moc.o screenCapture.moc.o optionsForm.moc.o options.moc.o rplotfo=
>> rmbase.moc.o RPlot.moc.o Rinterface.moc.o anatconForm.moc.o anatcon.moc.o  =
>> -lbicInventor -lCoin -lGL  -lSM -lICE -lXmu -lXext -lSM -lICE -lXi -lX11  -=
>> loobicpl -lpcre++ -lpcre -lbicpl -lvolume_io2 -lminc2 -lhdf5 -lz -lnetcdf -=
>> lm -lSoQt4 -lQtOpenGL -lQtGui -lQtCore -lXmu -lXi -lCoin -lGL -lXext -lSM -=
>> lICE -lX11 -ldl -lpthread -lCoin -lGL -lXext -lSM -lICE -lX11 -ldl -lpthrea=
>> d=20
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x18): undefined ref=
>> erence to `Q3GList::clear()'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x20): undefined ref=
>> erence to `Q3GList::~Q3GList()'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x28): undefined ref=
>> erence to `Q3GList::~Q3GList()'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x30): undefined ref=
>> erence to `Q3PtrCollection::newItem(void*)'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x40): undefined ref=
>> erence to `Q3GList::compareItems(void*, void*)'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x48): undefined ref=
>> erence to `Q3GList::read(QDataStream&, void*&)'
>> brain-view.o:(.rodata._ZTV7Q3GList[vtable for Q3GList]+0x50): undefined ref=
>> erence to `Q3GList::write(QDataStream&, void*) const'
>> brain-view.o:(.rodata._ZTI7Q3GList[typeinfo for Q3GList]+0x10): undefined r=
>> eference to `typeinfo for Q3PtrCollection'
>> pointInfoWindow.o: In function `coordinateInfoSet::coordinateInfoSet(QWidge=
>> t*, char const*)':
>> pointInfoWindow.cc:(.text+0x53): undefined reference to `Q3HBox::Q3HBox(QWi=
>> dget*, char const*, QFlags<Qt::WindowType>)'
>> pointInfoWindow.o: In function `textureInfoSet::textureInfoSet(QWidget*, ch=
>> ar const*)':
>> pointInfoWindow.cc:(.text+0x7ff): undefined reference to `Q3HBox::Q3HBox(QW=
>> idget*, char const*, QFlags<Qt::WindowType>)'
>> pointInfoWindow.o: In function `pointInfoWindow::pointInfoWindow(QWidget*, =
>> char const*)':
>> pointInfoWindow.cc:(.text+0xbb4): undefined reference to `Q3VBox::Q3VBox(QW=
>> idget*, char const*, QFlags<Qt::WindowType>)'
>> pointInfoWindow.o: In function `Q3HBox::~Q3HBox()':
>> pointInfoWindow.cc:(.text._ZN6Q3HBoxD2Ev[_ZN6Q3HBoxD5Ev]+0x13): undefined r=
>> eference to `vtable for Q3HBox'
>> pointInfoWindow.cc:(.text._ZN6Q3HBoxD2Ev[_ZN6Q3HBoxD5Ev]+0x1f): undefined r=
>> eference to `vtable for Q3HBox'
>> pointInfoWindow.cc:(.text._ZN6Q3HBoxD2Ev[_ZN6Q3HBoxD5Ev]+0x2b): undefined r=
>> eference to `Q3Frame::~Q3Frame()'
>> pointInfoWindow.o: In function `Q3VBox::~Q3VBox()':
>> pointInfoWindow.cc:(.text._ZN6Q3VBoxD2Ev[_ZN6Q3VBoxD5Ev]+0x13): undefined r=
>> eference to `vtable for Q3VBox'
>> pointInfoWindow.cc:(.text._ZN6Q3VBoxD2Ev[_ZN6Q3VBoxD5Ev]+0x1f): undefined r=
>> eference to `vtable for Q3VBox'
>> =2E..
>>
>> ideas anyone ?
>>
>> Sylvain
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