[MINC-users] Trouble installing RMINC

Jason Lerch jason at phenogenomics.ca
Sat Apr 13 17:24:47 EDT 2013


It looks like you are missing some of the automagic tools (autoconf, etc). 

Jason

On 2013-04-13, at 5:17 PM, Jonathan DuBois <jonathan.m.dubois at gmail.com> wrote:

> Hi Minc Users,
> 
> I am having some trouble installing RMINC on my Mac. I followed the
> direction here: https://github.com/mcvaneede/RMINC. The specific commands
> and errors are below. Any help would be appreciated.
> 
> Alternatively, is there a minc function to export the values and
> coordinates of a minc file to a csv or text file that could imported into
> R, manipulated, and written back to a minc file?
> 
> ######################
> :/usr/local$ export R_LIBS=/usr/local/
> :/usr/local$ sudo git clone https://github.com/mcvaneede/RMINC.git RMINC
> :/usr/local$ cd RMINC
> :/usr/local/RMINC$ ./autogen.sh
> ./autogen.sh: line 1: aclocal: command not found
> ./autogen.sh: line 2: autoconf: command not found
> :/usr/local/RMINC$ cd ..
> :/usr/local$ sudo R CMD INSTALL RMINC
> /Library/Frameworks/R.framework/Versions/3.0/Resources/library
> --configure-args='--with-build-path=/usr/local/bic'
> Warning: invalid package
> ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library’
> * installing to library
> ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library’
> * installing *source* package ‘RMINC’ ...
> ERROR: a 'NAMESPACE' file is required
> * removing
> ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RMINC’
> ######################
> 
> Thanks
> Jon DuBois
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users


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