[MINC-users] source compile

[George He]

correction:
The function declared but not defined is deform_polygons, which is called
by deform_surface.
Thanks,
George

On Wed, Oct 17, 2012 at 10:10 AM, George He <george.he at yale.edu> wrote:

> Hi there,
>
> I have been using a few programs from the minc-toolkit on an SGI machine
> and my goal is to compile it on Fedora/Centos machines.
> I downloaded minc-toolkit source code from
> https://github.com/BIC-MNI/minc-toolkit and then I tried to follow the
> instructions on that page to compile it (since I'm using Fedora/Centos).
>
> cmake ../minc-toolkit   -- this seemed working.
> make stopped at here:
>
> [ 58%] Building CXX object
> oobicpl/CMakeFiles/vertstats_math.dir/src/vertstats_math.cc.o
> In file included from
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/vertstats_math.cc:2:0:
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/mniVertstatsMath.h: In
> instantiation of ‘T vectorMean(std::vector<T>&) [with T = float]’:
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/mniVertstatsMath.h:93:25:
> required from ‘std::vector<T> vectorNormalise(std::vector<T>&) [with T =
> float]’
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/vertstats_math.cc:215:38:
> required from here
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/mniVertstatsMath.h:58:23:
> error: ‘vectorSum’ was not declared in this scope, and no declarations were
> found by argument-dependent lookup at the point of instantiation
> [-fpermissive]
> /home/jhe/Downloads/minc-toolkit/oobicpl/src/mniVertstatsMath.h:65:3:
> note: ‘template<class T> T vectorSum(std::vector<T>)’ declared here, later
> in the translation unit
> make[2]: ***
> [oobicpl/CMakeFiles/vertstats_math.dir/src/vertstats_math.cc.o] Error 1
> make[1]: *** [oobicpl/CMakeFiles/vertstats_math.dir/all] Error 2
> make: *** [all] Error 2
>
> But it's OK since I only need a few functions in conglomerate, so I just
> cd into conglomerate and did make and make install.
> It worked. but then I found I need the program "deform_surface", which was
> not compiled by default. Further, I found it was declared but not defined
> anywhere in the source code I have.
>
> My question is: where can I get the source code that defines
> deform_surface? If it was replace by another program, what is it? and how
> do I use that program to achieve what deform_surface was doing?
> It would be even better if you could help to compile the whole package.
>
> Thanks for the help.
> George
>
>