[MINC-users] Best way to convert UNC to MINC

[Nam, Kie Woo]

Dear Andrew Janke,

Thank you very much for your further answers. I very much appreciate your patience.

Best wishes,

Kie Woo



Kie Woo Nam
Postgraduate Research Student
Division of Psychological Medicine
Department of Psychosis Studies
Institute of Psychiatry, King’s College London
De Crespigny Park, Denmark Hill
London SE5 8AF, UK
Tel: +44 (0)20 7848 0061

________________________________________
From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] on behalf of Andrew Janke [a.janke at gmail.com]
Sent: 28 March 2012 13:24
To: MINC users mailing list
Cc: Simmons, Andy
Subject: Re: [MINC-users] Best way to convert UNC to MINC

On 28 March 2012 22:20, Nam, Kie Woo <kie_woo.nam at kcl.ac.uk> wrote:
> Thank you very much for the answer. I understand that I can convert a coronal UNC image into MINC format either by using (1) "coronal2axial" and "unc2mnc" or (2) "unc2analyze" and "nii2mnc" or "rawtominc".

And I'd be sticking with #1.

> So, I'm very sorry to bother you again, but would you be able to recommend which one to use between "nii2mnc" and "rawtominc" if I try option (2)? I wish to try both options because I'm equally worried about the risk from coronal-to-axial conversion as much as that from the UNC-to-Analyze one.

Well the obvious choice is nii2mnc as then you won't have to figure
out orientations, image sizes, image ranges, direction cosines etc and
pass them all in to rawtominc as parameters manually.  If you meant
nii2mnc or ana2mnc then the answer is nii2mnc.


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