[MINC-users] EMMA tools for Cygwin

[Paul GRAVEL]

Many thanks Andrew!

I think someone has asked the following question previously, but just to 
bu sure: where can I find the latest MINC source files to be recompiled 
for Cygwin?

As for the MINC1 vs MINC2 format, the file is actually in MINC1 format:
$file qfal_003_0_pet_fr1_32_sm9mm_VoWal_basFunc_k2.mnc
qfal_003_0_pet_fr1_32_sm9mm_VoWal_basFunc_k2.mnc: NetCDF Data Format data

Best Regards,

Paul


On Thu, 26 Jul 2012, Andrew Janke wrote:

> Hi Paul,
>
>> ##################################################
>> ??? Error using ==> niak_read_hdr_minc at 96
>> niak:read: Could not parse the minc header !
>>
>> Error in ==> niak_read_minc at 70
>> hdr = niak_read_hdr_minc(file_name);
>> ##################################################
>
>
>> Could this be a result of how it was compiled, and thus cause the error
>> explained above? And if so, is there another version of mincheader that
>> could solve this problem?
>>
>> I am using the following MINC tools package:
>> http://packages.bic.mni.mcgill.ca/cygwin/mni-2006-11-15.tar.gz
>
>> From these two bits of information I have two guesses as to what is up.
>
> 1. It's a MINC 2 files (HDF) and I'll bet that my old 2006 build of
> minc on cygwin isn't a MINC2 build.  What does this return?:
>
>   $ file qfal_003_0_pet_fr1_32_sm9mm_VoWal_basFunc_k2.mnc
>
> 2. You are using a 64 bit install of windows and the old cygwin build
> will be 32 bit.
>
> Both of these things mean that you are going to have to recompile the
> MINC tools on cygwin for your machine. I haven't done this in a while
> as I find it a lot easier to simply use the neurodebian VM on windows
> machines.
>
>
> a
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