[MINC-users] new minc-toolkit binary package

[Vladimir S. FONOV]

Hello Everybody,

it turns out that test suit /opt/minc/run_tests.sh is incompatible
with dash (Ubuntu replacement for bash), so to run it on ubuntu you
might have to execute it using bash explicitly i.e:

bash /opt/minc/run_tests.sh <prefix>

On Fri, Apr 20, 2012 at 7:49 PM, Vladimir S. FONOV
<vladimir.fonov at gmail.com> wrote:
> Hello Everybody,
>
> I've created a binary destribution of most of commonly used minc tools
> in a single package:
>
> for Ubuntu 11.04 (will work on newer versions as well, Andrew Janke
> also succesfully installed it on Ubuntu 10.10)
> http://www.bic.mni.mcgill.ca/~vfonov/software/minc-toolkit-0.3.5-20120419-Ubuntu_11.04-x86_64.deb
>
> for Debian 6:
> http://www.bic.mni.mcgill.ca/~vfonov/software/minc-toolkit-0.3.5-20120419-Debian_6.0-x86_64.deb
>
> for MacOS X 10.7:
> http://www.bic.mni.mcgill.ca/~vfonov/software/minc-toolkit-0.3.5-20120419-Darwin-x86_64.dmg
>
> It includes most of the standard minc tools, Display, Register and a
> basic image processing pipeline based on the one developed for NIHPD
> project ( standard_pipeline.pl) Everything is currently installed in
> /opt/minc , to avoid conflict with standard /usr/local/bic location.
> To use , source evironment in /opt/minc/minc-toolkit-config.sh for
> bash or /opt/minc/minc-toolkit-config.csh for tcsh
>
> Unfortunately, Display and Register  show everything in pink on MacOS X - maybe
> somebody with mac knowledge could take a look at it.
>
> The package is based on minc-toolkit superbuild package hosted on github:
>
> https://github.com/BIC-MNI/minc-toolkit
>
> If you feel like build it, read  README.txt at the bottom of github page
>
>
> Also, available collection of anatomical templates ( ICBM 152
> Nonlinear atlases version 2009 ):
>
> For Debian/Ubuntu:
> http://www.bic.mni.mcgill.ca/~vfonov/software/bic-mni-models-0.1.0-20120420.deb
>
> For MacOS X:
> http://www.bic.mni.mcgill.ca/~vfonov/software/bic-mni-models-0.1.0-20120420.dmg
>
> anatomical templates will be installed in
> /opt/minc/share/icbm152_model_09a and
> /opt/minc/share/icbm152_model_09c
>
> I have also made a package for testing installation, right now it is
> running a standard pipeline on two (supplied ) ICBM subjects:
>
> For Debian/Ubuntu:
> http://www.bic.mni.mcgill.ca/~vfonov/software/minc-toolkit-testsuit-0.1.0-20120420.deb
>
> For MacOS X:
> http://www.bic.mni.mcgill.ca/~vfonov/software/minc-toolkit-testsuit-0.1.0-20120420.dmg
>
> Test data is installed in /opt/minc/share/testsuit/ , to run the test
> execute /opt/minc/run_tests.sh <prefix> , it will take around
> 30minutes on modern computer , the output will be in
> <prefix>/00200  and <prefix>/00201 and the log file will be saved in
> <prefix>/minc-toolkit-test-<date>.log
>
> It would be great if somebody with a Mac could install the package and
> execute the test suite , to make sure it works as expected (I didn't
> have a chance).



-- 
Best regards,

 Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com