[MINC-users] mincaverage error

[Alex Zijdenbos]

Hi Lisa,

On the off-chance that this is the problem - are you sure you have
write access and free disk space in the location where you are trying
to write the output file?

-- Alex

On Fri, Mar 4, 2011 at 3:17 PM, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:
>
> Hi Andrew,
>
> I double checked each minc file (displayed them in register) and they all
> seemed to be fine...
>
> Don't know if this helps at all..., but here are some more information:
>
> 1. A correction to what I wrote earlier:
>
> > I am trying to run mincaverage on 43 minc files, all which have been N3
> > intensity nonuniformity normalized, neck portion cropped off, mincnorm-ed,
> > *and linearly (9parameter) registered to a standard template*.
>
>
> 2. I am using the -filelist option. I have a .txt file with each file name
> listed on separate lines. Is this the correct format for the filelist?
>
> 3. The version I am using:
>
> > > mincaverage -version
> > program: 2.1.00
> > libminc: 2.1.00
> > netcdf : 4.1.1 of May 15 2010 04:10:51 $
> > HDF5   : 1.8.4
>
>
>
> Thanks.
>
>
> Best,
> Lisa
>
> On Fri, Mar 4, 2011 at 11:52 AM, Andrew Wood <andrew at biospective.com> wrote:
>
> > Hi Lisa,
> >
> > Is there any chance that the problem is with your input minc files? I just
> > gave minc average a few good minc volumes plus a filename that didn't exist
> > and I got back your error message.
> >
> > Andrew
> >
> >
> > On Fri, Mar 4, 2011 at 2:23 PM, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:
> >
> > > Hi Jared,
> > >
> > > I tried re-running mincaverage with the -clobber extention.
> > > I also ran it using a totally new output filename too, but it still gives
> > > me
> > > the same error message.
> > >
> > > Thanks.
> > >
> > >
> > > Best,
> > > Lisa
> > >
> > >
> > >
> > > On Fri, Mar 4, 2011 at 11:05 AM, Jared Rowley <jared.rowley at gmail.com
> > > >wrote:
> > >
> > > > Hi Lisa,
> > > >
> > > > I think you need to to do mincaverage -clobber.
> > > >
> > > > My guess is that the output.mnc already exists and you need to do
> > > -clobber
> > > > to overwrite it.
> > > >
> > > > Jared
> > > >
> > > >
> > > > On Fri, Mar 4, 2011 at 2:00 PM, Lisa F. Akiyama <lrisa87 at uw.edu>
> > wrote:
> > > >
> > > > > Hello,
> > > > >
> > > > > I am trying to run mincaverage on 43 minc files, all which have been
> > N3
> > > > > intensity nonuniformity normalized, neck portion cropped off, and
> > > > > mincnorm-ed.
> > > > > The following is the error that I receive:
> > > > >
> > > > > Processing:........................miicv_attach: MINC package entry
> > > point
> > > > > > *ncvarid: ncid -1: NetCDF: Not a valid ID*
> > > > >
> > > > >
> > > > > When I run mincaverage on individual files and on subsets of the 43
> > > > files,
> > > > > mincaverage runs fine.
> > > > > What is the issue?
> > > > >
> > > > > Thank you in advance.
> > > > >
> > > > >
> > > > > Best,
> > > > > Lisa
> > > > > _______________________________________________
> > > > > MINC-users at bic.mni.mcgill.ca
> > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Jared Rowley
> > > > Translational Neuroimaging Laboratory
> > > > McGill Centre for Studies in Aging
> > > > Douglas Hospital Research Center
> > > > McGill University
> > > > 6825 LaSalle Blvd.
> > > > Montreal, QC Canada
> > > > H4H 1R3
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users