[MINC-users] mincaverage error

[Lisa F. Akiyama]

Hi Andrew,

I double checked each minc file (displayed them in register) and they all
seemed to be fine...

Don't know if this helps at all..., but here are some more information:

1. A correction to what I wrote earlier:

> I am trying to run mincaverage on 43 minc files, all which have been N3
> intensity nonuniformity normalized, neck portion cropped off, mincnorm-ed,
> *and linearly (9parameter) registered to a standard template*.


2. I am using the -filelist option. I have a .txt file with each file name
listed on separate lines. Is this the correct format for the filelist?

3. The version I am using:

> > mincaverage -version
> program: 2.1.00
> libminc: 2.1.00
> netcdf : 4.1.1 of May 15 2010 04:10:51 $
> HDF5   : 1.8.4



Thanks.


Best,
Lisa

On Fri, Mar 4, 2011 at 11:52 AM, Andrew Wood <andrew at biospective.com> wrote:

> Hi Lisa,
>
> Is there any chance that the problem is with your input minc files? I just
> gave minc average a few good minc volumes plus a filename that didn't exist
> and I got back your error message.
>
> Andrew
>
>
> On Fri, Mar 4, 2011 at 2:23 PM, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:
>
> > Hi Jared,
> >
> > I tried re-running mincaverage with the -clobber extention.
> > I also ran it using a totally new output filename too, but it still gives
> > me
> > the same error message.
> >
> > Thanks.
> >
> >
> > Best,
> > Lisa
> >
> >
> >
> > On Fri, Mar 4, 2011 at 11:05 AM, Jared Rowley <jared.rowley at gmail.com
> > >wrote:
> >
> > > Hi Lisa,
> > >
> > > I think you need to to do mincaverage -clobber.
> > >
> > > My guess is that the output.mnc already exists and you need to do
> > -clobber
> > > to overwrite it.
> > >
> > > Jared
> > >
> > >
> > > On Fri, Mar 4, 2011 at 2:00 PM, Lisa F. Akiyama <lrisa87 at uw.edu>
> wrote:
> > >
> > > > Hello,
> > > >
> > > > I am trying to run mincaverage on 43 minc files, all which have been
> N3
> > > > intensity nonuniformity normalized, neck portion cropped off, and
> > > > mincnorm-ed.
> > > > The following is the error that I receive:
> > > >
> > > > Processing:........................miicv_attach: MINC package entry
> > point
> > > > > *ncvarid: ncid -1: NetCDF: Not a valid ID*
> > > >
> > > >
> > > > When I run mincaverage on individual files and on subsets of the 43
> > > files,
> > > > mincaverage runs fine.
> > > > What is the issue?
> > > >
> > > > Thank you in advance.
> > > >
> > > >
> > > > Best,
> > > > Lisa
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >
> > >
> > > --
> > > Jared Rowley
> > > Translational Neuroimaging Laboratory
> > > McGill Centre for Studies in Aging
> > > Douglas Hospital Research Center
> > > McGill University
> > > 6825 LaSalle Blvd.
> > > Montreal, QC Canada
> > > H4H 1R3
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>