[MINC-users] N3 problem (Andrew Janke)

[Popescu, V.]

Dear Andrew,
Thank you very much for your help! Now it finally works, with the slice
added!
And I am using version 1.10. 
Thanks again!
Best wishes,
Veronica


-----Original Message-----
From: minc-users-bounces at bic.mni.mcgill.ca
[mailto:minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of
minc-users-request at bic.mni.mcgill.ca
Sent: donderdag 30 september 2010 18:00
To: minc-users at bic.mni.mcgill.ca
Subject: MINC-users Digest, Vol 62, Issue 9

Send MINC-users mailing list submissions to
	minc-users at bic.mni.mcgill.ca

To subscribe or unsubscribe via the World Wide Web, visit
	http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
or, via email, send a message with subject or body 'help' to
	minc-users-request at bic.mni.mcgill.ca

You can reach the person managing the list at
	minc-users-owner at bic.mni.mcgill.ca

When replying, please edit your Subject line so it is more specific
than "Re: Contents of MINC-users digest..."


Today's Topics:

   1. Re: N3 problem (Vladimir Fonov) (Andrew Janke)


----------------------------------------------------------------------

Message: 1
Date: Thu, 30 Sep 2010 03:51:23 +1000
From: Andrew Janke <a.janke at gmail.com>
Subject: Re: [MINC-users] N3 problem (Vladimir Fonov)
To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
Message-ID:
	<AANLkTi=YvaHf0EU3hCupYkZx7dm1dKCiWcU4yTQ+wTbG at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1

On Fri, Sep 17, 2010 at 17:35, Popescu, V. <v.popescu at vumc.nl> wrote:
> Dear Vladimir,
> Thanks for your answer.
> I ran the mincheader command and I got the following output.
> It looks fine to me. Plus I converted the image from nifti and not
> directly from DICOM.

Well from the headers it would seem that this is not the problem this
time. (although it often is). Can I ask what version of N3 you are
using? There was a long standing bug regarding spline sampling that we
fixed a few years back, it only occurred in certain very specific
cases of image dimensions and steps.

If this is the problem then if you do something as simple as adding
one slice in the Z direction:

   mincreshape -dimrange zspace=0,197 in.mnc out.mnc

before running N3 then odds are it should "just work".

Thanks


--
Andrew Janke
(a.janke at gmail.com || http://a.janke.googlepages.com/)
Canberra->Australia    +61 (402) 700 883


------------------------------

_______________________________________________
MINC-users mailing list
MINC-users at bic.mni.mcgill.ca
http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users


End of MINC-users Digest, Vol 62, Issue 9
*****************************************