[MINC-users] failures when running N3withsmallsmoothingdistances

[Vitali Zagorodnov]

I managed to install the latest versions. Both problems are still there.


In case of problem #2, there is an extra line in the error message:

/usr/local/bic/bin/nu_correct -clobber -distance 10 001.mnc N3m.mnc
-iterations 1000 -stop 0.000100
Processing:.............................................................
Done
terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc
nu_estimate_np_and_em: crashed while running spline_smooth (termination
status=6)
nu_correct: crashed while running nu_estimate_np_and_em (termination
status=65280)



-----Original Message-----
From: minc-users-bounces at bic.mni.mcgill.ca
[mailto:minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Andrew Janke
Sent: Tuesday, May 05, 2009 12:29 AM
To: MINC users mailing list
Subject: Re: [MINC-users] failures when running
N3withsmallsmoothingdistances

2009/5/5 Vitali Zagorodnov <ZVitali at ntu.edu.sg>:
> Errr.. My Linux skills are quite rusty. How do I force installation to
> use older gcc compiler?

The simplest is to just do this before you run configure..

   $ export CC=gcc-4.1
   $ export CXX=g++-4.1

> Yes, I am installing from source. For built packages, I don't know how
> to change default installation directory, which should be
> /usr/local/freesurfer/mni

   $ ./configure --prefix=/usr/local/freesurfer/mni


--
Andrew Janke
(a.janke at gmail.com || http://a.janke.googlepages.com/)
Canberra->Australia    +61 (402) 700 883
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