[MINC-users] dcm2mnc: dcm not a directory

[Michel Audette]

Hi Vladimir,

I guess it depends on the directory structure of the files.

I have a few animal datasets that I'm trying to process, and results vary:
michel at michel-desktop:~/data/animal/pig$ dcm2mnc PF0504/*
Checking file types...
File PF0504/00005/s_PF0504_00005_009.img appears to be DICOM (CD/Export).
Parsing 1108 files   |<--Skipping file PF0504/00005/s_PF0504_00005_000.des,
which is not in the expected format.
Skipping file PF0504/00006/s_PF0504_00006_000.des, which is not in the
expected format.
---->Skipping file PF0504/00007/s_PF0504_00007_000.des, which is not in the
expected format.
---->Skipping file PF0504/00008/s_PF0504_00008_000.des, which is not in the
expected format.
------->Skipping file PF0504/00009/s_PF0504_00009_000.des, which is not in
the expected format.
------>Skipping file PF0504/00010/s_PF0504_00010_000.des, which is not in
the expected format.
---------->Skipping file PF0504/00011/s_PF0504_00011_000.des, which is not
in the expected format.
->Skipping file PF0504/00012/s_PF0504_00012_000.des, which is not in the
expected format.
-------->Skipping file PF0504/00013/s_PF0504_00013_000.des, which is not in
the expected format.
------->Skipping file PF0504/00014/s_PF0504_00014_000.des, which is not in
the expected format.
--->
...
successful completion.

Thanks for the tip.

Cheers,

Michel

On Fri, Jan 9, 2009 at 6:05 PM, Vladimir Fonov <vladimir.fonov at gmail.com>wrote:

> Hello,
>
> Michel Audette wrote:
> > I'm unsuccessfully trying to convert a dcm to minc, but getting the
> > following:
> > michel at michel-desktop:~/data/animal$ dcm2mnc 247738/*
> > The final argument,
> >
> '247738/0975004_20080924_110033_135107182562812714417241314761750323614022251_CR.dcm/',
> > is not a directory
> >
>
> You have to specify the output directory i.e
>
> dcm2mnc 247738/*  somewhere/
>
>
> --
> Best regards,
>  Vladimir S. Fonov ~ vladimir dot fonov at gmail dot com
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>



-- 
Michel Audette, Ph.D.
R & D Engineer,
Kitware Inc.,
Chapel Hill, N.C.