[MINC-users] Minc-2 installation problems
mohamed Ali Bahri
m.bahri at ulg.ac.be
Mon Apr 6 05:54:30 EDT 2009
Hi Andrew,
Here are all what I obtain after make check.
--------------------------------------------------------------------------------------------------------------------------
[root at localhost minc-2.0.16]# make check
Making check in .
make[1]: entrant dans le répertoire « /usr/local/minc-2.0.16 »
make[1]: Rien à faire pour « check-am ».
make[1]: quittant le répertoire « /usr/local/minc-2.0.16 »
Making check in volume_io
make[1]: entrant dans le répertoire « /usr/local/minc-2.0.16/volume_io »
Making check in Documentation
make[2]: entrant dans le répertoire «
/usr/local/minc-2.0.16/volume_io/Documentation »
make[2]: Rien à faire pour « check ».
make[2]: quittant le répertoire «
/usr/local/minc-2.0.16/volume_io/Documentation »
Making check in Testing
make[2]: entrant dans le répertoire «
/usr/local/minc-2.0.16/volume_io/Testing »
make test-xfm
make[3]: entrant dans le répertoire «
/usr/local/minc-2.0.16/volume_io/Testing »
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include
-I../../volume_io/Include -I../../progs/Proglib -I/usr/local/include
-g -O2 -MT test-xfm.o -MD -MP -MF .deps/test-xfm.Tpo -c -o test-xfm.o
test-xfm.c
mv -f .deps/test-xfm.Tpo .deps/test-xfm.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2
-L/usr/local/lib -o test-xfm test-xfm.o ../../libvolume_io2.la
../../libminc2.la -lhdf5 -lz -lnetcdf -lm
gcc -g -O2 -o test-xfm test-xfm.o -L/usr/local/lib
../../.libs/libvolume_io2.a ../../.libs/libminc2.a
/usr/local/lib/libhdf5.a -lz -lnetcdf -lm
make[3]: quittant le répertoire « /usr/local/minc-2.0.16/volume_io/Testing »
make check-TESTS
make[3]: entrant dans le répertoire «
/usr/local/minc-2.0.16/volume_io/Testing »
Setting tolerance to 0.900000.
PASS: check_xfm.sh
==================
All 1 tests passed
==================
make[3]: quittant le répertoire « /usr/local/minc-2.0.16/volume_io/Testing »
make[2]: quittant le répertoire « /usr/local/minc-2.0.16/volume_io/Testing »
make[2]: entrant dans le répertoire « /usr/local/minc-2.0.16/volume_io »
make[2]: Rien à faire pour « check-am ».
make[2]: quittant le répertoire « /usr/local/minc-2.0.16/volume_io »
make[1]: quittant le répertoire « /usr/local/minc-2.0.16/volume_io »
Making check in testdir
make[1]: entrant dans le répertoire « /usr/local/minc-2.0.16/testdir »
cd . && chmod +x run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh
make minc test_mconv minc_types icv icv_range icv_dim test_speed
icv_dim1 icv_fillvalue test_xfm create_grid_xfm mincapi test_speed
make[2]: entrant dans le répertoire « /usr/local/minc-2.0.16/testdir »
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT minc.o -MD -MP
-MF .deps/minc.Tpo -c -o minc.o minc.c
mv -f .deps/minc.Tpo .deps/minc.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o minc minc.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm
mkdir .libs
gcc -g -O2 -o minc minc.o -L/usr/local/lib ../.libs/libvolume_io2.a
../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT test_mconv.o
-MD -MP -MF .deps/test_mconv.Tpo -c -o test_mconv.o test_mconv.c
mv -f .deps/test_mconv.Tpo .deps/test_mconv.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o test_mconv test_mconv.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o test_mconv test_mconv.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT minc_types.o
-MD -MP -MF .deps/minc_types.Tpo -c -o minc_types.o minc_types.c
mv -f .deps/minc_types.Tpo .deps/minc_types.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o minc_types minc_types.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o minc_types minc_types.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT icv.o -MD -MP
-MF .deps/icv.Tpo -c -o icv.o icv.c
mv -f .deps/icv.Tpo .deps/icv.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o icv icv.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm
gcc -g -O2 -o icv icv.o -L/usr/local/lib ../.libs/libvolume_io2.a
../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT icv_range.o -MD
-MP -MF .deps/icv_range.Tpo -c -o icv_range.o icv_range.c
mv -f .deps/icv_range.Tpo .deps/icv_range.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o icv_range icv_range.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o icv_range icv_range.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT icv_dim.o -MD
-MP -MF .deps/icv_dim.Tpo -c -o icv_dim.o icv_dim.c
mv -f .deps/icv_dim.Tpo .deps/icv_dim.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o icv_dim icv_dim.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o icv_dim icv_dim.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT test_speed.o
-MD -MP -MF .deps/test_speed.Tpo -c -o test_speed.o test_speed.c
mv -f .deps/test_speed.Tpo .deps/test_speed.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o test_speed test_speed.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o test_speed test_speed.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT icv_dim1.o -MD
-MP -MF .deps/icv_dim1.Tpo -c -o icv_dim1.o icv_dim1.c
mv -f .deps/icv_dim1.Tpo .deps/icv_dim1.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o icv_dim1 icv_dim1.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o icv_dim1 icv_dim1.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT icv_fillvalue.o
-MD -MP -MF .deps/icv_fillvalue.Tpo -c -o icv_fillvalue.o icv_fillvalue.c
mv -f .deps/icv_fillvalue.Tpo .deps/icv_fillvalue.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o icv_fillvalue icv_fillvalue.o ../libvolume_io2.la ../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -g -O2 -o icv_fillvalue icv_fillvalue.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT test_xfm.o -MD
-MP -MF .deps/test_xfm.Tpo -c -o test_xfm.o test_xfm.c
mv -f .deps/test_xfm.Tpo .deps/test_xfm.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o test_xfm test_xfm.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o test_xfm test_xfm.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT
create_grid_xfm.o -MD -MP -MF .deps/create_grid_xfm.Tpo -c -o
create_grid_xfm.o create_grid_xfm.c
mv -f .deps/create_grid_xfm.Tpo .deps/create_grid_xfm.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o create_grid_xfm create_grid_xfm.o ../libvolume_io2.la ../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -g -O2 -o create_grid_xfm create_grid_xfm.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include
-I../volume_io/Include -I/usr/local/include -g -O2 -MT mincapi.o -MD
-MP -MF .deps/mincapi.Tpo -c -o mincapi.o mincapi.c
mv -f .deps/mincapi.Tpo .deps/mincapi.Po
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -L/usr/local/lib
-o mincapi mincapi.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -g -O2 -o mincapi mincapi.o -L/usr/local/lib
../.libs/libvolume_io2.a ../.libs/libminc2.a /usr/local/lib/libhdf5.a
-lz -lnetcdf -lm
make[2]: « test_speed » est à jour.
make[2]: quittant le répertoire « /usr/local/minc-2.0.16/testdir »
make check-TESTS
make[2]: entrant dans le répertoire « /usr/local/minc-2.0.16/testdir »
Testing minc_types
Testing icv_range
Testing icv
Testing icv_dim
Testing icv_dim1
Testing icv_fillvalue
PASS: run_tests.sh
Testing minc_types
Testing icv_range
Testing icv
Testing icv_dim
Testing icv_dim1
Testing icv_fillvalue
PASS: run_test2.sh
PASS: xfmconcat_01.sh
PASS: xfmconcat_02.sh
**** Tests completed with no errors
PASS: mincapi
==================
All 5 tests passed
==================
make[2]: quittant le répertoire « /usr/local/minc-2.0.16/testdir »
make[1]: quittant le répertoire « /usr/local/minc-2.0.16/testdir »
Making check in doc
make[1]: entrant dans le répertoire « /usr/local/minc-2.0.16/doc »
make[1]: Rien à faire pour « check ».
make[1]: quittant le répertoire « /usr/local/minc-2.0.16/doc »
Making check in libsrc2
make[1]: entrant dans le répertoire « /usr/local/minc-2.0.16/libsrc2 »
Making check in test
make[2]: entrant dans le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
cd . && chmod +x testminctools.sh
make create-test-images create-test-images-2 datatype-test
dimension-test full-test grpattr-test hyper-test hyper-test-2 label-test
record-test slice-test valid-test volprops-test multires-test
convert-test vector_dimension-test
make[3]: entrant dans le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT create-test-images.o -MD -MP -MF
.deps/create-test-images.Tpo -c -o create-test-images.o create-test-images.c
mv -f .deps/create-test-images.Tpo .deps/create-test-images.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o create-test-images create-test-images.o
../../libminc2.la -lhdf5 -lz -lnetcdf -lm
mkdir .libs
gcc -DAPPARENTORDER -g -O2 -o create-test-images create-test-images.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT create-test-images-2.o -MD -MP -MF
.deps/create-test-images-2.Tpo -c -o create-test-images-2.o
create-test-images-2.c
mv -f .deps/create-test-images-2.Tpo .deps/create-test-images-2.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o create-test-images-2 create-test-images-2.o
../../libminc2.la -lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o create-test-images-2
create-test-images-2.o -L/usr/local/lib ../../.libs/libminc2.a
/usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT datatype-test.o -MD -MP -MF
.deps/datatype-test.Tpo -c -o datatype-test.o datatype-test.c
mv -f .deps/datatype-test.Tpo .deps/datatype-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o datatype-test datatype-test.o ../../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o datatype-test datatype-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT dimension-test.o -MD -MP -MF
.deps/dimension-test.Tpo -c -o dimension-test.o dimension-test.c
mv -f .deps/dimension-test.Tpo .deps/dimension-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o dimension-test dimension-test.o ../../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o dimension-test dimension-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT full-test.o -MD -MP -MF .deps/full-test.Tpo
-c -o full-test.o full-test.c
mv -f .deps/full-test.Tpo .deps/full-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o full-test full-test.o ../../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o full-test full-test.o -L/usr/local/lib
../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT grpattr-test.o -MD -MP -MF
.deps/grpattr-test.Tpo -c -o grpattr-test.o grpattr-test.c
mv -f .deps/grpattr-test.Tpo .deps/grpattr-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o grpattr-test grpattr-test.o ../../libminc2.la -lhdf5
-lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o grpattr-test grpattr-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT hyper-test.o -MD -MP -MF .deps/hyper-test.Tpo
-c -o hyper-test.o hyper-test.c
mv -f .deps/hyper-test.Tpo .deps/hyper-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o hyper-test hyper-test.o ../../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o hyper-test hyper-test.o -L/usr/local/lib
../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT hyper-test-2.o -MD -MP -MF
.deps/hyper-test-2.Tpo -c -o hyper-test-2.o hyper-test-2.c
mv -f .deps/hyper-test-2.Tpo .deps/hyper-test-2.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o hyper-test-2 hyper-test-2.o ../../libminc2.la -lhdf5
-lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o hyper-test-2 hyper-test-2.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT label-test.o -MD -MP -MF .deps/label-test.Tpo
-c -o label-test.o label-test.c
mv -f .deps/label-test.Tpo .deps/label-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o label-test label-test.o ../../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o label-test label-test.o -L/usr/local/lib
../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT record-test.o -MD -MP -MF
.deps/record-test.Tpo -c -o record-test.o record-test.c
mv -f .deps/record-test.Tpo .deps/record-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o record-test record-test.o ../../libminc2.la -lhdf5
-lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o record-test record-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT slice-test.o -MD -MP -MF .deps/slice-test.Tpo
-c -o slice-test.o slice-test.c
mv -f .deps/slice-test.Tpo .deps/slice-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o slice-test slice-test.o ../../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o slice-test slice-test.o -L/usr/local/lib
../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT valid-test.o -MD -MP -MF .deps/valid-test.Tpo
-c -o valid-test.o valid-test.c
mv -f .deps/valid-test.Tpo .deps/valid-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o valid-test valid-test.o ../../libminc2.la -lhdf5 -lz
-lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o valid-test valid-test.o -L/usr/local/lib
../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz -lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT volprops-test.o -MD -MP -MF
.deps/volprops-test.Tpo -c -o volprops-test.o volprops-test.c
mv -f .deps/volprops-test.Tpo .deps/volprops-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o volprops-test volprops-test.o ../../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o volprops-test volprops-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT multires-test.o -MD -MP -MF
.deps/multires-test.Tpo -c -o multires-test.o multires-test.c
mv -f .deps/multires-test.Tpo .deps/multires-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o multires-test multires-test.o ../../libminc2.la
-lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o multires-test multires-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT convert-test.o -MD -MP -MF
.deps/convert-test.Tpo -c -o convert-test.o convert-test.c
mv -f .deps/convert-test.Tpo .deps/convert-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o convert-test convert-test.o ../../libminc2.la -lhdf5
-lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o convert-test convert-test.o
-L/usr/local/lib ../../.libs/libminc2.a /usr/local/lib/libhdf5.a -lz
-lnetcdf -lm
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -I/usr/local/include
-DAPPARENTORDER -g -O2 -MT vector_dimension-test.o -MD -MP -MF
.deps/vector_dimension-test.Tpo -c -o vector_dimension-test.o
vector_dimension-test.c
mv -f .deps/vector_dimension-test.Tpo .deps/vector_dimension-test.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2
-L/usr/local/lib -o vector_dimension-test vector_dimension-test.o
../../libminc2.la -lhdf5 -lz -lnetcdf -lm
gcc -DAPPARENTORDER -g -O2 -o vector_dimension-test
vector_dimension-test.o -L/usr/local/lib ../../.libs/libminc2.a
/usr/local/lib/libhdf5.a -lz -lnetcdf -lm
make[3]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
make check-TESTS
make[3]: entrant dans le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
Creating 2D image with IRREGULAR sample dimension!! (2D_image.mnc)
Creating 3D image with slice scaling!! (3D_image.mnc)
Creating 4D image with slice scaling!! (4D_image.mnc)
No errors
PASS: create-test-images
Creating 3D image REAL stored as INT w/ slice scaling!!
(real_as_int_image.mnc)
Creating 3D image REAL stored as FLOAT w/ slice scaling!!
(real_as_float_image.mnc)
No errors
PASS: create-test-images-2
PASS: datatype-test
No errors
PASS: dimension-test
No errors
PASS: full-test
/test1/stuff objtype
/test1/stuff objname
/test2 maxvals
/test3 objtype
*****************
/test1
/test1/otherstuff
/test1/stuff
/test1/stuff/helloleila
/test1/theotherstuff
/test1/theotherstuff/thisstuff
/test2
/test2/stuff2
/test3
/test4
No errors
PASS: grpattr-test
miget_real_value_hyperslab()
miget_voxel_value_hyperslab, default dimensions
miget_voxel_value_hyperslab(), swapped dimensions
miget_voxel_hyperslab, reversed Z axis
Read 3x2x2 matrices of voxel values:
miget_hyperslab_normalized()
read and write entire hyperslab:
Read and verify hyperslab in original dimension order:
No errors
PASS: hyper-test
Creating image with slice scaling!!
Opening hyperslab-test2.mnc!
Sizes: 210, 245, 142
Getting a real value hyperslab
Starting at 4, 3, 5
Extending to 120, 180, 110
Test arbitrary location 70, 100, 104
Test from hyperslab: 9.519348
Test from voxel scaled: 9.519348
Test voxel value itself: 634.000000
HMMMMMMMMMM! let's try something else
Test arbitrary location 104, 100, 70
Test from hyperslab: 6.105524
Test from voxel scaled: 6.105524
Test voxel value itself: 181.000000
No errors
PASS: hyper-test-2
Creating label image !!
0
6
Number of defined labels 6
Print label file with file order x,y,z
0 ffffff 808080 ff0000 ff00 ff
0 ffffff 808080 ff0000 ff00 ff
0 ffffff 808080 ff0000 ff00 ff
0 ffffff 808080 ff0000 ff00 ff
Print label file with apparent order z,y,x
0 808080 ff00 808080 ff00 0
ff00 0 808080 0 808080 ff00
ffffff ff0000 ff ff0000 ff ffffff
ff ffffff ff0000 ffffff ff0000 ff
No errors
PASS: label-test
No errors
PASS: record-test
PASS: slice-test
PASS: valid-test
Multiresolution enabled: 1 depth: 2
Set compression type to 0
Got compression type 0
Set zlib level to 4
Got zlib level 4
No errors
PASS: volprops-test
Creating volume...
Writing data...
Selecting half-size image
Selecting quarter-size image
Return to full resolution.
Flush any remaining thumbnails.
No errors
PASS: multires-test
No errors
PASS: convert-test
Opening vector-dimension file!
Total number of dimensions : 4
Dimension Size in file order : 41 410 530 3
Dim class RECORD present check dim name for *vector_dimension*
Let's get the first 10 data values of each vector component (file order)
FILE ORDER --> zspace, yspace, xspace, vector_dimension
Vector Componenet 1
0 3 6 9 12 15 18 21 24 27
Vector Componenet 2
1 4 7 10 13 16 19 22 25 28
Vector Componenet 3
2 5 8 11 14 17 20 23 26 29
APPARENT ORDER --> vector_dimension, zspace, yspace, xspace
APPARENT ORDER SET
Vector Componenet 1
0 3 6 9 12 15 18 21 24 27
Vector Componenet 2
1 4 7 10 13 16 19 22 25 28
Vector Componenet 3
2 5 8 11 14 17 20 23 26 29
No errors
PASS: vector_dimension-test
Abort: Converting Version 1 (netCDF) to itself!!
FAIL: testminctools.sh
==================================
1 of 17 tests failed
Please report to a.janke at gmail.com
==================================
make[3]: *** [check-TESTS] Erreur 1
make[3]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
make[2]: *** [check-am] Erreur 2
make[2]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
make[1]: *** [check-recursive] Erreur 1
make[1]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2 »
make: *** [check-recursive] Erreur 1
[root at localhost minc-2.0.16]#
----------------------------------------------------------------------------------------------------------------------------------------------------
Even with these make check error I did make install and then tried to
install N3-1.10 package but the configure of the N3 did not fined minc.
Here is the config.log of minc (attached file)
Thanks
Mohamed
Andrew Janke a écrit :
> Hi Mohamed,
>
>
>> it install well without error only with make check I had the following
>> errors which are probably caused by optimization
>> ======================================
>> 1 of 17 tests failed
>> Please report to a.janke at gmail.com
>> ==================================
>> make[3]: *** [check-TESTS] Erreur 1
>> make[3]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
>> make[2]: *** [check-am] Erreur 2
>> make[2]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2/test »
>> make[1]: *** [check-recursive] Erreur 1
>> make[1]: quittant le répertoire « /usr/local/minc-2.0.16/libsrc2 »
>> make: *** [check-recursive] Erreur 1
>> ========================================
>>
>
> The above does not give enough information, what was the output above
> the 1 of 17 tests failed line?
>
>
>> After, I tried to install N3-1.10 package but unfortunately configure
>> command did not fined minc library.
>> --------------------
>> checking for library minc... no
>> configure: error: cannot find required library minc
>> ------------------------------------
>> The command line that I use for configuration is :
>> ./configure --prefix=/usr/local --with-build-path=/usr/local
>> --with-minc2=/usr/local
>>
>
> You will want:
>
> ./configure --prefix=/usr/local --with-build-path=/usr/local --with-minc2
>
> I take it you did run "make install" after "make check"? Perhaps have
> a look here:
>
> http://en.wikibooks.org/wiki/MINC/Tutorials/SourceInstall
>
> --
> Andrew Janke
> (a.janke at gmail.com || http://a.janke.googlepages.com/)
> Canberra->Australia +61 (402) 700 883
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
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