[MINC-users] Minc-2 installation problems

[Claude LEPAGE]

Hi,

> Thank you for your answer. I tried to use HDF5-1.6.6 instead of 
> hdf5-1.8.2 but now I have errors with HDF5.
> I use the following command lines:
>
> 1) FC=/usr/bin/gfortran ./configure --prefix=/usr/local/ 
> --with-zlib=/usr/local/ --enable-fortran --enable-cxx
> 2) make

Here is how I compile HDF5-1.6.6 in 64 bits Linux:

./configure --disable-shared --prefix=/usr/local --with-build-path=/usr/local CFLAGS='${CFLAGS} -fpic' CPPFLAGS='${CPPFLAGS} -fpic' CXXFLAGS='${CXXFLAGS} -fpic'
make 
make install

--disable-shared is optional
no need to fuss about fortran (not needed by minc2)

By the way, which compiler are you using? It looks like your C++
compiler does not like the code. Strange...

gcc --version

minc2 may compile with gcc 4.2+, but not all MNI tools do (yet).

Claude


> ===============================================
>
> g++ -O2 -I. -I../../src -I../../src -D_BSD_SOURCE -D_POSIX_SOURCE 
> -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE 
> -I/usr/local//include -c H5PropList.cpp -fPIC -DPIC -o .libs/H5PropList.lo
> H5PropList.cpp: In member function 'std::string 
> H5::PropList::getClassName() const':
> H5PropList.cpp:428: error: 'free' was not declared in this scope
> make[3]: *** [H5PropList.lo] Erreur 1
> make[3]: quittant le répertoire « /usr/local/hdf5-1.6.6/c++/src »
> make[2]: *** [lib] Erreur 1
> make[2]: quittant le répertoire « /usr/local/hdf5-1.6.6/c++ »
> make[1]: *** [lib] Erreur 1
> make[1]: quittant le répertoire « /usr/local/hdf5-1.6.6 »
> make: *** [all] Erreur 2
> =======================================================
>
> Thanks a lot,
> Mohamed
>
> Claude LEPAGE a écrit :
> > Hi,
> >
> >   
> >> I have a problem with minc-2.0.17 installation (make command fails). Any 
> >> one have an idea how I can solve that?
> >> I use linux (Fedora 9, 64-bit).
> >>
> >> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc 
> >> -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib 
> >> -I./conversion/Acr_nema -I./libsrc2 -g -O2 -MT libsrc/hdf_convenience.lo 
> >> -MD -MP -MF libsrc/.deps/hdf_convenience.Tpo -c libsrc/hdf_convenience.c 
> >> -o libsrc/hdf_convenience.o
> >> libsrc/hdf_convenience.c: In function ‘hdf_id_add’:
> >> libsrc/hdf_convenience.c:83: erreur: too few arguments to function 
> >> ‘H5Gopen2’
> >> libsrc/hdf_convenience.c: In function ‘hdf_var_add’:
> >> libsrc/hdf_convenience.c:185: erreur: too few arguments to function 
> >>     
> >
> > I haven't seen this problem, but here is an idea.
> >
> > Which version of HDF5 have you installed? minc2 has been tested
> > with HDF5 up to 5-1.6.7. If you are using 5-1.8.X, I would suggest
> > to try 5-1.6.6 (what I am currently using) or 5-1.6.7. If I recall,
> > 5-1.8.X is not 100% compatible with previous versions.
> >
> > The problem may be different too, but making sure you are using
> > a compatible version of HDF5 is the first step.
> >
> > Yours,
> >
> > Claude
> >  
> >   
> > ------------------------------------------------------------------------
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >   
>
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