[MINC-users] problem with nu_estimate_np_and_em

[Tejaswini Ganapathi]

Hi Claude,
All of my installed files (exe files) are in /usr/bin. Infact nu_correct,
nu_estimate and nu_evaluate work fine. I'm having this problem only with
nu_estimate_np_and_em

Ive tried the following on the shell command line,
$ nu_estimate_np_and_em -normalize_field -save_fields -mask
mask.mnc breast.mnc fields_time.mnc

$ nu_estimate_np_and_em -clobber -normalize_field -initial fieldimages.mnc
breastimages.mnc breastfields.imp

And I get exactly the same error,

nu_estimate_np_and_em: couldn't find program "class_statistics"
nu_estimate_np_and_em: couldn't find program "estimate"
add_default_args: warning: adding default arguments for unregistered program
"estimate" at /usr/bin/nu_estimate_np_and_em line 1678
add_default_args: warning: adding default arguments for unregistered program
"spline_smooth" at /usr/bin/nu_estimate_np_and_em line 1683
add_default_args: warning: adding default arguments for unregistered program
"mincresample" at /usr/bin/nu_estimate_np_and_em line 1683
add_default_args: warning: adding default arguments for unregistered program
"resample_labels" at /usr/bin/nu_estimate_np_and_em line 1683
add_default_args: warning: adding default arguments for unregistered program
"mincmath" at /usr/bin/nu_estimate_np_and_em line 1683
spawn: error: program "mincmath" not registered at
/usr/bin/nu_estimate_np_and_em line 673

The file permissions are fine, as the software works for nu_estimate,
nu_evaluate and nu_correct. Can you please help me with this?

Thanks,
TG



On Fri, Sep 26, 2008 at 4:21 PM, Claude LEPAGE <claude at bic.mni.mcgill.ca>wrote:

>
> Have you set the PATH accordingly? Or do a "rehash". Are the programs
> in /usr/bin/? Do a directory listing. File permissions???
>
> >
> > Hi ! I tried running nu_estimate_np_and_em with the following options :
> > >
> > > $ nu_estimate_np_and_em -normalize_field -save_fields -mask mask.mnc
> > > breast.mnc fields_time.mnc
> > >
> > > I get the following error:
> > >
> > > nu_estimate_np_and_em: couldn't find program "class_statistics"
> > > nu_estimate_np_and_em: couldn't find program "estimate"
> > > add_default_args: warning: adding default arguments for unregistered
> > > program "estimate" at /usr/bin/nu_estimate_np_and_em line 1678
> > > add_default_args: warning: adding default arguments for unregistered
> > > program "spline_smooth" at /usr/bin/nu_estimate_np_and_em line 1683
> > > add_default_args: warning: adding default arguments for unregistered
> > > program "mincresample" at /usr/bin/nu_estimate_np_and_em line 1683
> > > add_default_args: warning: adding default arguments for unregistered
> > > program "resample_labels" at /usr/bin/nu_estimate_np_and_em line 1683
> > > add_default_args: warning: adding default arguments for unregistered
> > > program "mincmath" at /usr/bin/nu_estimate_np_and_em line 1683
> > > spawn: error: program "mincmath" not registered at
> > > /usr/bin/nu_estimate_np_and_em line 673
> > >
> > > I installed minc and n3 as per instructions. Am i missing some
> libraries?
> > > Thanks
> > > --
> > > TG
> > >
> >
> >
> >
> > --
> > TG
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>