[MINC-users] newbee segmentation question

[Claude LEPAGE]

Hi,

> 4) Resample labels into standard space using:
> mincresample -like standardbrain.mnc -transform target.xfm    
> lbl.mnc    lbl_stnd.mnc
> Reloading the transformed lbl_stnd.mnc on top of standardbrain.mnc in  
> Display and the segmentation is WAY off, not even close.

In addition to the suggestion to invert the transformation,
I would suggest to add the options -nearest_neighbour -byte
if you are resampling integer labels. -keep_real_range may
also be required. Otherwise, a label like 10 may be resampled
as 10.2. 

Claude