[MINC-users] MINC2 on Mac OS X 10.5

[Alexandre CARMEL-VEILLEUX]

It could be an intel vs. PPC issue as well. What's the output of:

file /sw/lib/libhdf5.0.0.0.dylib

and

file /usr/local/bic/bin/register

My "package" is a tar-ball of /usr/local on my build machine. All
dependencies are compiled and in the various subdirectory. In the
package, rawtominc (at least for the MINC 1.5 version) is broken
due to a 32 vs 64 bit bug. My build will only run on an x86_64
architecture 10.5 mac.

Alex

On Tue, Jul 29, 2008 at 10:58:49AM -0400, Burt Crépeault wrote:
> Date: Tue, 29 Jul 2008 10:58:49 -0400
> From: "Burt Crépeault" <burt.crepeault at crulrg.ulaval.ca>
> To: "MINC users mailing list" <minc-users at bic.mni.mcgill.ca>
> Subject: Re: [MINC-users] MINC2 on Mac OS X 10.5
> 
> Ok, got a little further but not much. What I did so far on a fresh Leopard
> install:
> 
> - installed all the packages from
> http://packages.bic.mni.mcgill.ca/osx-10.5/
> - installed fink
> - from a terminal:
> # sudo apt-get install hdf5
> # sudo apt-get install netcdf
> # registerdyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
>   Referenced from: /usr/local/bic/bin/register
>   Reason: image not found
> # sudo ln -sf /sw/lib/libhdf5.0.0.0.dylib /usr/local/lib/libhdf5.0.dylib
> # registerdyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
>   Referenced from: /usr/local/bic/bin/register
>   Reason: no suitable image found.  Did find:
>     /usr/local/lib/libhdf5.0.dylib: mach-o, but wrong architecture
>     /usr/local/lib/libhdf5.0.dylib: mach-o, but wrong architecture
> - tried installing hdf5 through macports, got same errors
> 
> Is this a 32-bit vs. 64-bit error? Should I install Alex's 64-bit package
> found at http://packages.bic.mni.mcgill.ca/osx-10.5-x86_64-alex/ ?
> 
> Burt.
> 
> 
> On Mon, Jul 28, 2008 at 2:26 PM, Alexandre CARMEL-VEILLEUX <
> acveilleux at mrs.mni.mcgill.ca> wrote:
> 
> > Andrew Janke's 10.5 packages assume that you have the following
> > already installed:
> >
> >        libhdf5
> >        libnetcdf
> >
> > He installs those with Fink. (http://www.finkproject.org/)
> >
> > Alex
> >
> > On Mon, Jul 28, 2008 at 02:03:40PM -0400, Burt Crépeault wrote:
> > > Date: Mon, 28 Jul 2008 14:03:40 -0400
> > > From: "Burt Crépeault" <burt.crepeault at crulrg.ulaval.ca>
> > > To: "MINC users mailing list" <minc-users at bic.mni.mcgill.ca>
> > > Subject: [MINC-users] MINC2 on Mac OS X 10.5
> > >
> > > Hi again,
> > >
> > > After downloading and installing all the packages from here on a fresh
> > > install of Leopard, I'm still having problems. On most of them I get this
> > > error message:
> > >
> > > dyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
> > >   Referenced from: /usr/local/bic/bin/inormalize
> > >   Reason: image not found
> > > Trace/BPT trap
> > >
> > > (libhdf5.0.dylib is nowhere to be found on the Mac).
> > >
> > > I also got this error message attempting nu_correct:
> > >
> > > Can't locate MNI/Startup.pm in @INC (@INC contains: /Users/Simon/lib/perl
> > > /System/Library/Perl/5.8.8/darwin-thread-multi-2level
> > > /System/Library/Perl/5.8.8 /Library/Perl/5.8.8/darwin-thread-multi-2level
> > > /Library/Perl/5.8.8 /Library/Perl
> > > /Network/Library/Perl/5.8.8/darwin-thread-multi-2level
> > > /Network/Library/Perl/5.8.8 /Network/Library/Perl
> > > /System/Library/Perl/Extras/5.8.8/darwin-thread-multi-2level
> > > /System/Library/Perl/Extras/5.8.8 /Library/Perl/5.8.6 /Library/Perl/5.8.1
> > .)
> > > at /usr/local/bic/bin/nu_correct line 37.
> > > BEGIN failed--compilation aborted at /usr/local/bic/bin/nu_correct line
> > 37.
> > >
> > > Obviously I'm missing some libraries and/or have wrongly set environment
> > > variables.
> > >
> > > What are the dependencies for the minc packages to install and run
> > properly?
> > > Is there a readme somewhere about this? I looked all over the wiki but
> > must
> > > admit, coming from the outside, I feel kind of lost in there.
> > >
> > > Thanks,
> > >
> > > --
> > > Burt Crépeault
> > > Research Assistant
> > > Centre de Recherche de l'Université Laval - Robert-Giffard
> > > 418-663-5741, ext 6844
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> 
> 
> 
> -- 
> Burt Crépeault
> Research Assistant
> Centre de Recherche de l'Université Laval - Robert-Giffard
> 418-663-5741, ext 6844
> 
> >
> 
> 
> -- 
> Burt Crépeault
> Research Assistant
> Centre de Recherche de l'Université Laval - Robert-Giffard
> 418-663-5741, ext 6844
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users