[MINC-users] Linker errors on OS X Tiger when compiling ITK MINC2ImageIO

[Thomas Mansi]

Hi Andrew,

I managed to compile MINC2 CVS but unfortunately I still have the  
same linker error with ITK. I am going to do more tests, and in  
particular try on other systems to see if it is a Mac related issue  
(which I strongly suspect)

Anyway, I had some troubles though to compile MINC2 CVS on my system  
(gcc, MacOS X, Tiger) and here is the hacks I did to get it. It might  
interest somebody.

First, CMake did not find the files ncgentab.h and ncgentab.c in  
progs/mincgen. I manually copied these files from the 2.0.15 release,  
but maybe it is not a viable solution

Second, bison and flex were unable to correctly find the source  
codes. I slightly modified the CMakeLists.txt that is in progs/ to  
add the full path in the BISON and FLEX targets (I just added $ 
{CMAKE_SOURCE_DIR} in front of the source codes). I join you the  
modified CMakeLists.txt

Are those two issues known? Maybe I made some mistakes here and  
that's why ITK still resists me.

Thanks again for your help!
Best

Thomas


-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: CMakeLists.txt
Url: http://www2.bic.mni.mcgill.ca/pipermail/minc-users/attachments/20080415/8feb07f0/attachment.txt 
-------------- next part --------------



Le 14 avr. 08 ? 21:28, Thomas Mansi a ?crit :
> Dear Andrew, sorry for the late answer.
>
> Thank you for the tip! I am going to get the CVS version and try to
> compile it as soon as possible. I keep you informed.
>
> Thanks again for your help,
>
> Best regards
> Thomas
>
>
> Le 11 avr. 08 ? 07:22, Andrew Janke a ?crit :
>> Hi again Thomas,
>>
>> I have just made a change in CVS (rewrote the error code) that should
>> fix this.  If you happen to have access to the BIC system could you
>> give this version a go please?
>>
>>    cvs -d cvs.bic.mni.mcgill.ca:/private-cvsroot checkout minc
>>
>> should do the trick.
>>
>>
>> a
>>
>>>  However, when I tried to compile ITK against it I obtained the same
>>>  error
>>>
>>>  [ 95%] Building CXX object Code/Review/CMakeFiles/ITKIOMINC2.dir/
>>>  itkMINC2ImageIO.o[ 95%] Building CXX object Code/Review/CMakeFiles/
>>>  ITKIOMINC2.dir/itkMINC2ImageIOFactory.oLinking CXX shared
>>>  library ../../bin/libITKIOMINC2.dylibld: common symbols not allowed
>>>  with MH_DYLIB output format with the -multi_module option/Users/
>>>  tmansi/local/imaging/minc/install/lib/libminc2.a(hdf_convenience.o)
>>>  definition of common __m2_list (size 16)/Users/tmansi/local/ 
>>> imaging/
>>>  minc/install/lib/libminc2.a(minc_globdef.o) definition of common
>>>  _minc_call_depth (size 16)/Users/tmansi/local/imaging/minc/install/
>>>
>>> lib/libminc2.a(minc_globdef.o) definition of common _minc_trash_var
>>>  (size 16)/usr/bin/libtool: internal link edit command failedmake 
>>> [2]:
>>>  *** [bin/libITKIOMINC2.3.3.0.dylib] Error 1make[1]: *** [Code/
>>> Review/
>>>  CMakeFiles/ITKIOMINC2.dir/all] Error 2make: *** [all] Error 2
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users