[MINC-users] ***UNCHECKED*** ***UNCHECKED*** RE: mincconvert to minc2problems

[Michel.Audette at medizin.uni-leipzig.de]

<1207321785.20595.70.camel at mouse17.phenogenomics.ca>
<160E3DD4FB702C4CB860C65186686E6902424E5D at MRZS152229.medizin.uni-leipzig.de> <1207324635.20595.78.camel at mouse17.phenogenomics.ca>
From: "Audette, Michel" <Michel.Audette at medizin.uni-leipzig.de>
To: "Leila Baghdadi" <baghdadi at phenogenomics.ca>
Cc: <minc-users at bic.mni.mcgill.ca>

Hi Leila, 

stupidly, I did not enable --enable-minc2 when I last configured and built my minc stuff. I don't know where my mind was. 

Thanks for your help. 

Cheers, 

Michel


-----Original Message-----
From: Leila Baghdadi [mailto:baghdadi at phenogenomics.ca]
Sent: Fri 4/4/2008 5:57 PM
To: Audette, Michel
Subject: ***UNCHECKED*** ***UNCHECKED*** RE: [MINC-users] mincconvert to minc2problems
 
Michel

Not sure if I understand the problem here

 mincconvert heartMarkersClass0a_iso_distlt5.mnc leilaa.mnc -2

if I do the above I have no problem and further

baghdadi at gus:~/Desktop/michel$ mincinfo -minc_version leilaa.mnc
Version: 2 (HDF5)


and I can read it into ITK (you are probably using the same itk minc2
code that I have written) (snap attached)

I have attached the minc2 files

Leila


On Fri, 2008-04-04 at 17:34 +0200, Audette, Michel wrote:
> Hi Leila, 
> 
> turns out not to be too large, so I'm emailing the files to you. 
> 
> Cheers,
> 
> Michel
> 
> Michel Audette, Ph.D.   
> Innovation Center Computer Assisted Surgery (ICCAS)   
> Semmelweisstraße 14  
> Leipzig, Germany  
> Phone: ++49 (0) 341 / 97 - 1 20 13  
> Fax: ++49 (0) 341 / 97 - 1 20 09 
>  
> 
> 
> 
> -----Original Message-----
> From: minc-users-bounces at bic.mni.mcgill.ca [mailto:minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Leila Baghdadi
> Sent: April 4, 2008 5:10 PM
> To: MINC users mailing list
> Subject: Re: [MINC-users] mincconvert to minc2 problems
> 
> Michel,
> 
> I do not work on minc2 at work but if you send me your image
> information, I can check it this weekend and see if I can find out what
> is going on. is this a multichannel data set by any chance.
> 
> 
> Leila
> 
> On Fri, 2008-04-04 at 16:32 +0200, Audette, Michel wrote:
> > Hi folks, 
> > 
> > I'm working with Rupert Brooks to apply his ITK-based registration that he's developing, and for some reason, my attempt to mincconvert to minc2 seems to fail. 
> > 
> > maudette at icaw164201:~/data/data/heartData/mincdata/01446397_mnc>  mincconvert -2 heartMarkersClass0a_iso_distlt5.mnc heartMarkersClass0a_iso_distlt5.mnc2 -clob
> > maudette at icaw164201:~/data/data/heartData/mincdata/01446397_mnc> mincconvert -2 heartMarkersClass0b_iso_distlt5.mnc heartMarkersClass0b_iso_distlt5.mnc2 -clob
> > maudette at icaw164201:~/data/data/heartData/mincdata/01446397_mnc> file heartMarkersClass0a_iso_distlt5.mnc2
> > heartMarkersClass0a_iso_distlt5.mnc2: NetCDF Data Format data
> > maudette at icaw164201:~/data/data/heartData/mincdata/01446397_mnc> file heartMarkersClass0b_iso_distlt5.mnc2
> > heartMarkersClass0b_iso_distlt5.mnc2: NetCDF Data Format data
> > 
> > Can someone suggest a course of action? 
> > 
> > Cheers, 
> > 
> > Michel
> > 
> > Michel Audette, Ph.D.  
> > Innovation Center Computer Assisted Surgery (ICCAS)  
> > Semmelweisstraße 14 
> > Leipzig, Germany 
> > Phone: ++49 (0) 341 / 97 - 1 20 13 
> > Fax: ++49 (0) 341 / 97 - 1 20 09
> > 
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> 
> 
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
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