[MINC-users] MINC 2.0.13

[Alex Zijdenbos]

Anybody tried to build this package yet? It does not seem to work out
of the box:

% ./configure --prefix=/usr/local/bic
% make
depbase=`echo conversion/nifti1/mnc2nii.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
        gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include
-I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema     -g
-O2 -MT conversion/nifti1/mnc2nii.o -MD -MP -MF $depbase.Tpo -c -o
conversion/nifti1/mnc2nii.o conversion/nifti1/mnc2nii.c &&\
        mv -f $depbase.Tpo $depbase.Po
conversion/nifti1/mnc2nii.c:1:19: minc2.h: No such file or directory
make[2]: *** [conversion/nifti1/mnc2nii.o] Error 1
make[2]: Leaving directory `/usr/local/src/minc-2.0.13'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/usr/local/src/minc-2.0.13'
make: *** [all] Error 2

$ find . -name minc2.h
./libsrc2/minc2.h

Looks like there is a problem with the -I list. It's including
./libsrc, but not ./libsrc2 where minc2.h seems to live.

-- A

On 9/15/07, Andrew Janke <a.janke at gmail.com> wrote:
> Hi all,
>
> Thanks to some work by Claude and others, we now have a 2.0.13 release
> of MINC2.
>
> http://packages.bic.mni.mcgill.ca/tgz/minc-2.0.13.tar.gz
>
> I would be willing to say that this is our first stable release of
> MINC2 (or at least more stable than previous versions!) There are a
> few small fixes that are needed with mni_perllib and classify that I
> will release shortly but beyond that all would appear good.  A few of
> use (myself included) have been running this version of MINC2 for some
> time now with no significant problems beyond what has been fixed in
> this release.
>
> There are a number of fixes in this release, and a new tool.  Here are
> the NEWS and Changelog files:
>
> ==NEWS==
> * Fixed a few small build errors for make check
> * Changes to ensure there is a clean ITK minc build
> * added xfmflip
> * Fixed buffering and chunking for fast internal file compression
> * updated nii2mnc and mnc2nii with the latest version of niftilib
>
> ==Changelog==
> 2007-09-13  Andrew L Janke <a.janke at gmail.com>
>     * Added a few more free's for memory thanks to Claude
>
> 2007-08-24  Andrew L Janke <a.janke at gmail.com>
>     * added xfmflip and man page
>     * fixed a bug in the build of minccalc
>     * updated nifti library for nii2mnc
>
> 2007-08-08 Claude Lepage <claude at bic.mni.mcgill.ca>
>     * Increased size of MI_MAX_VAR_BUFFER_SIZE and fix chunking
>     for internal file compression using hdf5
>     * Modified mincconvert to use default chunking
>
> 2007-05-18  Andrew L Janke <a.janke at gmail.com>
>     * Fixed up small problems with build process
>     * replaced csh scripts with sh. (checks fail if no tcsh)
>     * added libsrc2 to the INCLUDES. why this was not in before beats me
>
> 2006-09-01  Jonathan Harlap <jharlap at bic.mni.mcgill.ca>
>     * conversion/Acr_nema - Fixed a bug causing dump_acr_nema to skip
>     all elements with element number 0x0010
>
> Once a few others out there have built this successfully I will
> release Binary packages to suit.
>
>
> --
> Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
> Canberra->Australia    +61 (402) 700 883
> _______________________________________________
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>
>