[MINC-users] mnc2nii conversion problem

Claude LEPAGE claude at bic.mni.mcgill.ca
Sun Oct 28 12:12:04 EDT 2007


Hello,

> --> the result: before conversion values (before -> after) are 654 -> 672 in one point. If i take a different points its for example 232 -> 116 and so on. There is no real pattern but if one looks at the images with register both seems to be "quite" similar.
> 
> Any suggestions what i did wrong?

This looks like the way minc stores integer data with ranges. Try -float instead
of -short. Is this better?

> P.S.: I tried to install minc 2.0.13 and 2.0.14 with the following error when i type "make" after ./configure

You have to tell configure that you are building minc2. Try the following:

./configure --enable-minc2 --with-minc2 <other options here>

I think one of the two minc2 flags is obsolete, but it does work with both. You
also need --with-build-path=... for the path of hdf5 and netcdf. 

Hopefully, the INSTALL notes will be updated by next release.

Claude



More information about the MINC-users mailing list