[MINC-users] mritotal fails in autocrop during nlfit

[EJ Nikelski]

Hi all,

   I seem to be the only one (trying) to use mritotal to do nonlinear
fitting. Andrew fixed the xfmtool problem, but it now falls over in
autocrop. Specifically, if I say ...

==========
>>mritotal -verbose -modeldir /usr/local/mni/share/mni_autoreg -model
icbm_avg_152_t1_tal_lin -nonlinear -startlevel 16 -stoplevel 4b
-objective xcorr -nocrop invol.mnc outvol.mnc
==========

I get (eventually) ...

==========
[mritotal] [jnikelski at chimera:/data/raid01/userData/jnikelski/nlfit]
[2007-11-06 17:48:14] /usr/local/mni/bin/autocrop invol.mnc
/var/tmp/mritotal_10259//invol_headcrop.mnc -bbox
/var/tmp/mritotal_10259//invol_headmask.mnc -expand 6 6 6
set_options: must supply even number of args (option/value pairs) at
/usr/local/mni/bin/autocrop line 681
mritotal: crashed while running autocrop (termination status=65280)
==========

   The set_options reference is in Spawn::spawn, which seems to want
its arguments in pairs (dunno why).  Here are the autocrop details:

jnikelski at chimera:~/data/nlfit$ autocrop -version
autocrop 0.99.2, built from:
Package mni_autoreg 0.99.2, compiled by rotor at romeo
(i686-pc-linux-gnu) on Mon May  8 23:16:34 EDT 2006

-Jim