[MINC-users] compilation on fedora

Wed Jun 28 00:15:08 EDT 2006

Hi Andrew,
 I tried to compile Mesa but it causes some trouble that the X
libraries are relocated in Fedora 5.   However, I tried to run the
command where make fails (below), but adding -lglut
as an option - that seemed to work.
My skills in the Make system are limited to trial and error +
googling, so I'd really apreciate if some one could direct me to where
I should enter -lglut so that it is put as an option automatically.
Also, if someone has an idea why (Display) it is not working out of
the box on Fedora 5 I'd like to hear  about that.

Thanks!

Soren

gcc -g -O2 -o Display dummy.o main/main.o main/display.o
main/event_loop.o main/graphics.o main/three_d.o main/transforms.o
atlas/atlas.o input_files/input_files.o input_files/volume_file.o
callbacks/atlas.o callbacks/call_globals.o callbacks/colour_coding.o
callbacks/file.o callbacks/line_ops.o callbacks/object_ops.o
callbacks/marker_ops.o callbacks/polygon_ops.o callbacks/quit.o
callbacks/regions.o callbacks/render_ops.o callbacks/segmenting.o
callbacks/surf_segmenting.o callbacks/surface_curves.o
callbacks/surface_extract.o callbacks/view_ops.o
callbacks/volume_ops.o callbacks/volume_transform_ops.o
current_obj/current_obj.o edit_surface/connected.o edit_surface/edit.o
edit_surface/segment.o images/images.o markers/markers.o
surface_extraction/boundary_extraction.o
surface_extraction/data_structs.o surface_extraction/init_surface.o
surface_extraction/extract.o surface_extraction/surface.o
surface_extraction/surface_events.o voxel_scan/scan_objects.o
events/change_markers.o events/clip_plane.o events/film_loop.o
events/magnify.o events/mouse.o events/mouse_trans.o
events/pick_object.o events/pick_view.o events/rotate_slice.o
events/spaceball.o events/virt_sb.o events/window_man.o
events/utilities.o immediate_mode/draw_immed.o
intersect/ray_polygons.o intersect/plane_polygons.o cursor/cursor.o
cursor/cursor_icon.o menu/build_menu.o menu/cursor_pos.o menu/menu.o
menu/input_menu.o menu/selected.o menu/text.o
cursor_contours/contours.o segmenting/cut_neighbours.o
segmenting/painting.o segmenting/segmenting.o
segmenting/segment_polygons.o slice_window/colour_bar.o
slice_window/colour_coding.o slice_window/crop.o
slice_window/draw_slice.o slice_window/histogram.o
slice_window/pick_angle.o slice_window/quadmesh.o slice_window/slice.o
slice_window/slice_3d.o slice_window/slice_events.o
slice_window/undo.o slice_window/view.o surface_curves/closest_line.o
surface_curves/events.o surface_curves/edge_distance.o
tubes/convert_lines.o structures/action_table.o structures/fit_view.o
structures/lights.o structures/render.o structures/view.o
structures/window.o  Graphics/libbicgl.a -lGLU -lGL -lbicpl
-lvolume_io -lminc -lnetcdf -lm

Gives:
slice_window/crop.o: In function `crop_and_load_volume':
/root/Desktop/download/Display-1.4.1/slice_window/crop.c:165: warning:
the use of `tmpnam' is dangerous, better use `mkstemp'
Graphics/libbicgl.a(glut_windows.o): In function `lookup_font':
/root/Desktop/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:692:
undefined reference to `glutBitmap8By13'
Graphics/libbicgl.a(glut_windows.o): In function `WS_add_idle_function':
/root/Desktop/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:1151:
undefined reference to `glutIdleFunc'
Graphics/libbicgl.a(glut_windows.o): In function `flip_screen_y':
/root/Desktop/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:919:
undefined reference to `glutGet'
Graphics/libbicgl.a(glut_windows.o): In function `flip_window_y':

But adding -lglut to that line will give
slice_window/crop.o: In function `crop_and_load_volume':
/root/Desktop/download/Display-1.4.1/slice_window/crop.c:165: warning:
the use of `tmpnam' is dangerous, better use `mkstemp'

Which i assume is an insignificant warning.

On 6/26/06, Andrew Janke <a.janke at gmail.com> wrote:
> Hi Soren,
>
> Amusingly enough I came across this same problem with a machine or two
> in Stockholm just last week... In my case the solution was to get and
> compile a version of GLUT as opposed to using the system version.  I
> canna remember the version that I used though.. :(  Suffice to say, no
> RPM that I could find (via rpmfind/etc) seemed to work.
>
>
> a
>
> On 6/26/06, Soren Christensen <sorench at gmail.com> wrote:
> > Dear MINc users,
> >  I was wondering if anybody had experience with compiling the MINC
> > tools under Fedora 5.
> > I previously posted a problem with the CLK_TCK macro that could not be
> > found by the linker. I found a solution to that on:
> > http://www.cs.utah.edu/dept/old/texinfo/glibc-manual-0.02/library_19.html
> > In case other people experience the same problem.
> > However, now I am stuck with compilation of Display (MINC, NETCDF and
> > BICPL seem to work).
> > The error below arises when running make (for Display).
> > Could anyone see where the problem is - I guess it has something to do
> > with GLUT but i am not excatly sure how to narrow it down further.
> >
> > Thanks and best regards
> > Soren
> >
> > .....
> > gcc -g -O2 -o Display dummy.o main/main.o main/display.o
> > main/event_loop.o main/graphics.o main/three_d.o main/transforms.o
> > atlas/atlas.o input_files/input_files.o input_files/volume_file.o
> > callbacks/atlas.o callbacks/call_globals.o callbacks/colour_coding.o
> > callbacks/file.o callbacks/line_ops.o callbacks/object_ops.o
> > callbacks/marker_ops.o callbacks/polygon_ops.o callbacks/quit.o
> > callbacks/regions.o callbacks/render_ops.o callbacks/segmenting.o
> > callbacks/surf_segmenting.o callbacks/surface_curves.o
> > callbacks/surface_extract.o callbacks/view_ops.o
> > callbacks/volume_ops.o callbacks/volume_transform_ops.o
> > current_obj/current_obj.o edit_surface/connected.o edit_surface/edit.o
> > edit_surface/segment.o images/images.o markers/markers.o
> > surface_extraction/boundary_extraction.o
> > surface_extraction/data_structs.o surface_extraction/init_surface.o
> > surface_extraction/extract.o surface_extraction/surface.o
> > surface_extraction/surface_events.o voxel_scan/scan_objects.o
> > events/change_markers.o events/clip_plane.o events/film_loop.o
> > events/magnify.o events/mouse.o events/mouse_trans.o
> > events/pick_object.o events/pick_view.o events/rotate_slice.o
> > events/spaceball.o events/virt_sb.o events/window_man.o
> > events/utilities.o immediate_mode/draw_immed.o
> > intersect/ray_polygons.o intersect/plane_polygons.o cursor/cursor.o
> > cursor/cursor_icon.o menu/build_menu.o menu/cursor_pos.o menu/menu.o
> > menu/input_menu.o menu/selected.o menu/text.o
> > cursor_contours/contours.o segmenting/cut_neighbours.o
> > segmenting/painting.o segmenting/segmenting.o
> > segmenting/segment_polygons.o slice_window/colour_bar.o
> > slice_window/colour_coding.o slice_window/crop.o
> > slice_window/draw_slice.o slice_window/histogram.o
> > slice_window/pick_angle.o slice_window/quadmesh.o slice_window/slice.o
> > slice_window/slice_3d.o slice_window/slice_events.o
> > slice_window/undo.o slice_window/view.o surface_curves/closest_line.o
> > surface_curves/events.o surface_curves/edge_distance.o
> > tubes/convert_lines.o structures/action_table.o structures/fit_view.o
> > structures/lights.o structures/render.o structures/view.o
> > structures/window.o  Graphics/libbicgl.a -lGLU -lGL -lbicpl
> > -lvolume_io -lminc -lnetcdf -lm
> > slice_window/crop.o: In function `crop_and_load_volume':
> > /root/download/Display-1.4.1/slice_window/crop.c:165: warning: the use
> > of `tmpnam' is dangerous, better use `mkstemp'
> > Graphics/libbicgl.a(glut_windows.o): In function `lookup_font':
> > /root/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:692:
> > undefined reference to `glutBitmap8By13'
> > Graphics/libbicgl.a(glut_windows.o): In function `WS_add_idle_function':
> > /root/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:1151:
> > undefined reference to `glutIdleFunc'
> > Graphics/libbicgl.a(glut_windows.o): In function `flip_screen_y':
> > /root/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:919:
> > undefined reference to `glutGet'
> > Graphics/libbicgl.a(glut_windows.o): In function `flip_window_y':
> > /root/download/Display-1.4.1/Graphics/GLUT_windows/glut_windows.c:913:
> > undefined reference to `glutGet'
> > Graphics/libbicgl.a(glut_windows.o): In function `WS_get_screen_size':.......
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
>
>
> --
> Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
> Canada->Montreal                                   Cell: +1 (514) 924 2012
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>