[MINC-users] dcm2mnc with Philips scan

[Audette, Michel]

Hello again, 

please disregard the previous message. 

Looks like the process complains a lot, but somehow produces a minc file. I just noticed that the 2nd time I ran it, it complained of a lack of clobber option, which told me that there was a minc file after all... 

Best regards, 

Michel


-----Original Message-----
From: minc-users-bounces at bic.mni.mcgill.ca on behalf of Audette, Michel
Sent: Thu 6/1/2006 5:16 PM
To: MINC-users at bic.mni.mcgill.ca
Subject: [MINC-users] dcm2mnc with Philips scan
 
Hi everyone, 

there seems to have been trouble with the BIC website, so my Google search for my problem met with silence when I tried to click the link to a prior thread. 

My current problem is trying to convert Philips dicoms files to minc. I see the following: 

maudette at icaw164201:~/research/source/hip> dcm2mnc becken-boehme-dicom/dicom/Std165/Ser632/* becken-boehme-mnc
Checking file types...
File becken-boehme-dicom/dicom/Std165/Ser632/Img15660 appears to be DICOM (CD/Export).
Parsing 106 files    |<--WARNING: Can't find Philips slice count           |
WARNING: Can't find Philips slice index
WARNING: Can't find Philips private creator ID.
WARNING: Can't find Philips slice count
...
->
WARNING: Can't find Philips private creator ID.
WARNING: calculated slice width (2.0000000000) disagrees with file's slice width (-2.0000000000)
nccreate: filename "becken-boehme-mnc/becken_boehme_igor_studie_20051122_094405/becken_boehme_igor_studie_20051122_094405_7440.mnc": netCDF file exists && NC_NOCLOBBER
(from micreate): Unable to create file 'becken-boehme-mnc/becken_boehme_igor_studie_20051122_094405/becken_boehme_igor_studie_20051122_094405_7440.mnc'
Error creating MINC file becken-boehme-mnc/becken_boehme_igor_studie_20051122_094405/becken_boehme_igor_studie_20051122_094405_7440.mnc.
Done processing files.

Can anyone offer any guidance? 

Best regards, 

Michel

Michel Audette, Ph.D. 
Innovation Center Computer Assisted Surgery (ICCAS) 
Philipp-Rosenthal-Strasse 55
Leipzig, Germany
Phone: ++49 (0) 341 / 97 - 1 20 13
Fax: ++49 (0) 341 / 97 - 1 20 09


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