[MINC-users] animal and conglomerate

[Teodor Stanescu]

1.
> Thanks for pointing out the problem in conglomerate.  I've fixed the 
> conglomerate 1.5 package to include a configure script and checked it on 
> one system to ensure it works, so you can download it again and it 
> should be all good...

It runs fine now. Thank you.


2.
> Hi,
>
> The ICBM-152 model is here:
>
> http://packages.bic.mni.mcgill.ca/tgz/mni-models_icbm152-lin-1.0.tar.gz
>
> 	-bert

I have this model installed along with 'mni-models_average305-lin-1.0.tar.gz' and 'mni-models_colin27-lin-1.0.tar.gz'.

I think 'stx_segment' looks for different files (please see output below)

> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/atlas_grey.mnc does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/atlas_white.mnc does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/atlas_ven_manual.mnc does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/atlas_level0.5_BG.mnc does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/limits_grey.tag does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/limits_ven_manual.tag does not exist
> > /usr/local/mni/data/ANIMAL_INSECT/icbm152-v1.0/limits_level0.5_BG.tag does not exist
> > Missing model files at /usr/local/mni/bin/stx_segment.pl line 838.

that are not included (or different labeled?) in 'mni-models_icbm152-lin-1.0.tar.gz'.

After building 'mni-models_icbm152-lin-1.0' the files I got installed are as follows:

icbm_avg_152_pd_tal_lin_16_blur.mnc
icbm_avg_152_pd_tal_lin_16_mask.mnc
icbm_avg_152_pd_tal_lin_2_blur.mnc
icbm_avg_152_pd_tal_lin_2_dxyz.mnc
icbm_avg_152_pd_tal_lin_2_mask.mnc
icbm_avg_152_pd_tal_lin_4_blur.mnc
icbm_avg_152_pd_tal_lin_4_dxyz.mnc
icbm_avg_152_pd_tal_lin_4_mask.mnc
icbm_avg_152_pd_tal_lin_8_blur.mnc
icbm_avg_152_pd_tal_lin_8_dxyz.mnc
icbm_avg_152_pd_tal_lin_8_mask.mnc
icbm_avg_152_pd_tal_lin_headmask.mnc
icbm_avg_152_pd_tal_lin_mask.mnc
icbm_avg_152_pd_tal_lin.mnc
icbm_avg_152_t1_tal_lin_16_blur.mnc
icbm_avg_152_t1_tal_lin_16_mask.mnc
icbm_avg_152_t1_tal_lin_2_blur.mnc
icbm_avg_152_t1_tal_lin_2_dxyz.mnc
icbm_avg_152_t1_tal_lin_2_mask.mnc
icbm_avg_152_t1_tal_lin_4_blur.mnc
icbm_avg_152_t1_tal_lin_4_dxyz.mnc
icbm_avg_152_t1_tal_lin_4_mask.mnc
icbm_avg_152_t1_tal_lin_8_blur.mnc
icbm_avg_152_t1_tal_lin_8_dxyz.mnc
icbm_avg_152_t1_tal_lin_8_mask.mnc
icbm_avg_152_t1_tal_lin_headmask.mnc
icbm_avg_152_t1_tal_lin_mask.mnc
icbm_avg_152_t1_tal_lin.mnc
icbm_avg_152_t2_tal_lin_16_blur.mnc
icbm_avg_152_t2_tal_lin_16_mask.mnc
icbm_avg_152_t2_tal_lin_2_blur.mnc
icbm_avg_152_t2_tal_lin_2_dxyz.mnc
icbm_avg_152_t2_tal_lin_2_mask.mnc
icbm_avg_152_t2_tal_lin_4_blur.mnc
icbm_avg_152_t2_tal_lin_4_dxyz.mnc
icbm_avg_152_t2_tal_lin_4_mask.mnc
icbm_avg_152_t2_tal_lin_8_blur.mnc
icbm_avg_152_t2_tal_lin_8_dxyz.mnc
icbm_avg_152_t2_tal_lin_8_mask.mnc
icbm_avg_152_t2_tal_lin_headmask.mnc
icbm_avg_152_t2_tal_lin_mask.mnc
icbm_avg_152_t2_tal_lin.mnc

Is 'icbm152-v1.0' a different version of 'mni-models_icbm152-lin-1.0'? Can I actually use 'stx_segment' with 'mni-models_icbm152-lin-1.0'?

Thank you for your feedback.

Teo

PhD Candidate
Medical Physics
Cross Cancer Institute
11560 University Avenue
Edmnton, AB, T6G 1Z2
Phone: (780) 432-8622
Fax: (780) 432-8615


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