From Paul.Rasser at newcastle.edu.au Thu Aug 3 02:12:41 2006 From: Paul.Rasser at newcastle.edu.au (Paul Rasser) Date: Thu, 03 Aug 2006 16:12:41 +1000 Subject: [MINC-users] cortical_surface Message-ID: I've recently installed http://www.bic.mni.mcgill.ca/users/jason/mactel/ (which so far has been great). I was wondering if the package cortical_surface is still available? Thanks, Paul. >>> jason at bic.mni.mcgill.ca 07/11/06 11:44 PM >>> A full installer (370Mb) can be found at: http://www.bic.mni.mcgill.ca/users/jason/mactel/ This will install into /usr/local/minc2 (well, it's supposed to, so let me know if it decides to put the software somewhere else). Everything is compiled against a modified version of minc 2.0.09. Let me know of any bugs anyone finds. And if you do, do so quickly - I too will lose easy access to an intel mac by the end of the week. Known bugs: * bicpl not compiled against an image library (i.e. ray_trace would not work compiled against this version of bicpl) * perl libraries have to be installed separately. Jason Paul Thompson wrote: >Andrew, Simon, Jason -- thanks to all of you, these are much >appreciated! I am having a go with them now, and they do seem to be >working, except for libvolume_io.a, which I'm having a look at. >See you (we'll have to pitch in money to buy Andrew an Intel Mac ;) >Paul >http://www.loni.ucla.edu/~thompson/thompson.html > >On Jul 10, 2006, at 3:19 PM, Andrew Janke wrote: > > > >>On 7/10/06, Simon Duchesne wrote: >> >> >> >>>Andrew has put a MINC package built on/for Intel MACs. See the >>>distribs on >>>packages.bic.mni.mcgill.ca >>> >>> >>Correct, I put what I had done here: >> >> http://packages.bic.mni.mcgill.ca/osx-10.4-intel/ >> >> >> >>>This being said, there's a few bugs on install; quite possibly >>>rebuilding >>>netcdf-mni will fix them. >>> >>> >>This too is correct. However I no longer have (immediate) access to >>an intel based mac to rebuild the required packages! :( Until apple >>makes nice and gives me one I'm afraid I'm a bit stymied. >> >> >>a >>_______________________________________________ >>MINC-users at bic.mni.mcgill.ca >>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >> >> > >_______________________________________________ >MINC-users at bic.mni.mcgill.ca >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > _______________________________________________ MINC-users at bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users From jason at bic.mni.mcgill.ca Thu Aug 3 10:51:38 2006 From: jason at bic.mni.mcgill.ca (Jason Lerch) Date: Thu, 03 Aug 2006 10:51:38 -0400 Subject: [MINC-users] cortical_surface In-Reply-To: References: Message-ID: <44D20D7A.6010308@bic.mni.mcgill.ca> Paul Rasser wrote: >I've recently installed http://www.bic.mni.mcgill.ca/users/jason/mactel/ (which so far has been great). I was wondering if the package cortical_surface is still available? > > It should be - though I sadly no longer have access to an intel mac, and so cannot update that package for the moment. I'm not entirely sure why cortical_surface is not on packages.bic.mni.mcgill.ca/tgz - maybe someone else at the MNI has an answer? Cheers, Jason >Thanks, >Paul. > > > > >>>>jason at bic.mni.mcgill.ca 07/11/06 11:44 PM >>> >>>> >>>> >A full installer (370Mb) can be found at: > >http://www.bic.mni.mcgill.ca/users/jason/mactel/ > >This will install into /usr/local/minc2 (well, it's supposed to, so let >me know if it decides to put the software somewhere else). Everything is >compiled against a modified version of minc 2.0.09. > >Let me know of any bugs anyone finds. And if you do, do so quickly - I >too will lose easy access to an intel mac by the end of the week. > >Known bugs: >* bicpl not compiled against an image library (i.e. ray_trace would not >work compiled against this version of bicpl) >* perl libraries have to be installed separately. > >Jason > >Paul Thompson wrote: > > > >>Andrew, Simon, Jason -- thanks to all of you, these are much >>appreciated! I am having a go with them now, and they do seem to be >>working, except for libvolume_io.a, which I'm having a look at. >>See you (we'll have to pitch in money to buy Andrew an Intel Mac ;) >>Paul >>http://www.loni.ucla.edu/~thompson/thompson.html >> >>On Jul 10, 2006, at 3:19 PM, Andrew Janke wrote: >> >> >> >> >> >>>On 7/10/06, Simon Duchesne wrote: >>> >>> >>> >>> >>> >>>>Andrew has put a MINC package built on/for Intel MACs. See the >>>>distribs on >>>>packages.bic.mni.mcgill.ca >>>> >>>> >>>> >>>> >>>Correct, I put what I had done here: >>> >>> http://packages.bic.mni.mcgill.ca/osx-10.4-intel/ >>> >>> >>> >>> >>> >>>>This being said, there's a few bugs on install; quite possibly >>>>rebuilding >>>>netcdf-mni will fix them. >>>> >>>> >>>> >>>> >>>This too is correct. However I no longer have (immediate) access to >>>an intel based mac to rebuild the required packages! :( Until apple >>>makes nice and gives me one I'm afraid I'm a bit stymied. >>> >>> >>>a >>>_______________________________________________ >>>MINC-users at bic.mni.mcgill.ca >>>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >>> >>> >>> >>> >>_______________________________________________ >>MINC-users at bic.mni.mcgill.ca >>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >> >> >> >> > >_______________________________________________ >MINC-users at bic.mni.mcgill.ca >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > >_______________________________________________ >MINC-users at bic.mni.mcgill.ca >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > From a.janke at gmail.com Fri Aug 4 03:34:10 2006 From: a.janke at gmail.com (Andrew Janke) Date: Fri, 4 Aug 2006 03:34:10 -0400 Subject: [MINC-users] cortical_surface In-Reply-To: <44D20D7A.6010308@bic.mni.mcgill.ca> References: <44D20D7A.6010308@bic.mni.mcgill.ca> Message-ID: > >I've recently installed http://www.bic.mni.mcgill.ca/users/jason/mactel/ (which so far has been great). I was wondering if the package cortical_surface is still available? > > > I'm not entirely sure why cortical_surface is not on > packages.bic.mni.mcgill.ca/tgz - maybe someone else at the MNI has an > answer? It used to be around in some form or another, however I canna find it right now. I have just tagged and made a new package (with a lot of help from claude), get it here: http://packages.bic.mni.mcgill.ca/tgz/cortical_surface-1.1.2.tar.gz -- Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) Canada->Montreal Cell: +1 (514) 924 2012 From a.janke at gmail.com Tue Aug 29 17:47:37 2006 From: a.janke at gmail.com (Andrew Janke) Date: Tue, 29 Aug 2006 17:47:37 -0400 Subject: [MINC-users] Minctools on MAC OS 10.3 In-Reply-To: References: Message-ID: Paul, These two are just perl scripts, you should be able to just take a copy of them. a On 8/10/06, Paul GRAVEL wrote: > Thank you very much Andrew, it's working. > > Now, is there any way to install stx_segment and mritopet > on a MAC? > > Regards, > > Paul > > On Fri, 28 Jul 2006, Andrew Janke wrote: > > > > I need to install the minctools on a MAC running OS 10.3.9. I am > > > downloading the file from: > > > http://packages.bic.mni.mcgill.ca/osx-10.3/ > > > > > > Once the installation of the packages is done, should everything be > > > running smoothly, or do I need to install other packages, e.g. GLUT, > > > before being able to run programs such as Display? > > > > There are still a few things that have to be done by hand. :( THis includes: > > > > 1. Install X11 (if not already -- usually it is). > > 2. install netpbm via fink > > 3. install mni_perllib in the usual fashion > > 4. install GetOpt::Tabular from CPAN. > > > > Besides that, update your PATH and things should be good. > > > > > > a > > _______________________________________________ > > MINC-users at bic.mni.mcgill.ca > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > > > -- Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) Canada->Montreal Cell: +1 (514) 924 2012 Cell: +1 (514) 924 2012 From a.janke at gmail.com Tue Aug 29 17:48:07 2006 From: a.janke at gmail.com (Andrew Janke) Date: Tue, 29 Aug 2006 17:48:07 -0400 Subject: [MINC-users] problem with using EMMA In-Reply-To: References: <33807.129.25.24.114.1155325485.squirrel@mail.math.drexel.edu> Message-ID: On 8/11/06, yixin at math.drexel.edu wrote: > >> h=openimage('/home/yixin/t1_icbm_normal_1mm_pn3_rf20.mnc'); > ??? Invalid MEX-file '/opt/matlabR14sp3/toolbox/emma/miinquire.mexglx': > /opt/matlabR14sp3/bin/glnx86/../../sys/os/glnx86/libgcc_s.so.1: version > `GCC_3.3' not found (required by /usr/lib/libstdc++.so.6). > > Error in ==> openimage at 173 > DimSizes = miinquire (filename, 'imagesize'); If I can grok the above error mesage correctly the error is that matlab wsa compiled with GCC 3.3 and I suspect that you compiled MINC and EMMA with . There is no way around this problem (Matlab sort of forces your hand) then installing gcc 3.3 and compiling EMMA/MINC etc using GCC 3.3 Andrew -- Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) Canada->Montreal Cell: +1 (514) 924 2012 From se at hst.aau.dk Wed Aug 30 04:56:02 2006 From: se at hst.aau.dk (Simon Fristed Eskildsen) Date: Wed, 30 Aug 2006 10:56:02 +0200 Subject: [MINC-users] Compiling Display with netpbm In-Reply-To: <33807.129.25.24.114.1155325485.squirrel@mail.math.drexel.edu> References: <33807.129.25.24.114.1155325485.squirrel@mail.math.drexel.edu> Message-ID: <44F552A2.5040109@hst.aau.dk> I just compiled almost all the BIC software from scratch on my laptop. This time upgraded to minc2. I ran into a bit of trouble compiling the software that need to do some image i/o (Display, conglomerate, ray_trace). I compiled bicpl with the --with-image-netpbm configure option, so image i/o should work. However, the linker complained about undefined references to several ppm-functions. The gcc command simply missed -lnetpbm. So to let the configure script add the library to the compile commands, I added an AC_CHECK_LIB macro to check for netpbm in configure.in. This solved the problem for all three packages, and everything went smooth. Did I miss something? I can't remember having to do this when I compiled with minc1.4 (and older). Regards Simon From sean at rogue-research.com Wed Aug 30 13:21:39 2006 From: sean at rogue-research.com (Sean McBride) Date: Wed, 30 Aug 2006 13:21:39 -0400 Subject: [MINC-users] MINC and 64-bit compilation Message-ID: <20060830172139.17961@smtp1.sympatico.ca> Hi all, Is MINC (1 or 2) 64 bit clean? That is, does it work correctly if compiled in an environment where pointers are 64 bit? Even more specifically, I am most interested in the LP64 data model, shown here: I'd be interested in hearing from anyone that's built MINC on any 64 bit OS. Thanks! -- ____________________________________________________________ Sean McBride, B. Eng sean at rogue-research.com Rogue Research www.rogue-research.com Mac Software Developer Montr?al, Qu?bec, Canada From jason at bic.mni.mcgill.ca Wed Aug 30 13:25:30 2006 From: jason at bic.mni.mcgill.ca (Jason Lerch) Date: Wed, 30 Aug 2006 13:25:30 -0400 Subject: [MINC-users] MINC and 64-bit compilation In-Reply-To: <20060830172139.17961@smtp1.sympatico.ca> References: <20060830172139.17961@smtp1.sympatico.ca> Message-ID: <47949D86-4E90-4FF2-BD2C-C6B97BAFFF4F@bic.mni.mcgill.ca> MINC itself is 64-bit clean now. Some of the surrounding applications likely still have a few bugs lurking in them, most prevalently in ParseArgv calls. I don't know of anyone who has compiled it 64 bit on PowerPC. But 64 bit IRIX (both gcc and MipsPro compilers) and amd64 versions are in use in different places. Hope this helps, Jason On 30-Aug-06, at 1:21 PM, Sean McBride wrote: > Hi all, > > Is MINC (1 or 2) 64 bit clean? That is, does it work correctly if > compiled in an environment where pointers are 64 bit? Even more > specifically, I am most interested in the LP64 data model, shown here: > > 64bitPorting/ > transition/chapter_3_section_3.html> > > I'd be interested in hearing from anyone that's built MINC on any > 64 bit OS. > > Thanks! > > -- > ____________________________________________________________ > Sean McBride, B. Eng sean at rogue-research.com > Rogue Research www.rogue-research.com > Mac Software Developer Montr?al, Qu?bec, Canada > > > > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users From pgravel at bic.mni.mcgill.ca Wed Aug 30 16:33:23 2006 From: pgravel at bic.mni.mcgill.ca (Paul GRAVEL) Date: Wed, 30 Aug 2006 16:33:23 -0400 Subject: [MINC-users] Minctools on MAC OS 10.3 In-Reply-To: Message-ID: Hi Andrew, I did copy the script but when I run it, it returns with the error: Can't locate ParseArgs.pm I had the same problem with Startup.pm & JobControl.pm but I found the files under /usr/local/mni/lib/mni_autoreg, and I modified the PERL5LIB variable accordingly. However, I looked on the MAC for the ParseArgs.pm file, but couldn't find it. I also looked in some directories on shadow but no luck. Can I just copy this file from shadow, and if so, where would it be located? Thank you very much again. Best Regards, Paul On Tue, 29 Aug 2006, Andrew Janke wrote: > Paul, > > These two are just perl scripts, you should be able to just take a copy of them. > > > a > > On 8/10/06, Paul GRAVEL wrote: > > Thank you very much Andrew, it's working. > > > > Now, is there any way to install stx_segment and mritopet > > on a MAC? > > > > Regards, > > > > Paul > > > > On Fri, 28 Jul 2006, Andrew Janke wrote: > > > > > > I need to install the minctools on a MAC running OS 10.3.9. I am > > > > downloading the file from: > > > > http://packages.bic.mni.mcgill.ca/osx-10.3/ > > > > > > > > Once the installation of the packages is done, should everything be > > > > running smoothly, or do I need to install other packages, e.g. GLUT, > > > > before being able to run programs such as Display? > > > > > > There are still a few things that have to be done by hand. :( THis includes: > > > > > > 1. Install X11 (if not already -- usually it is). > > > 2. install netpbm via fink > > > 3. install mni_perllib in the usual fashion > > > 4. install GetOpt::Tabular from CPAN. > > > > > > Besides that, update your PATH and things should be good. > > > > > > > > > a > > > _______________________________________________ > > > MINC-users at bic.mni.mcgill.ca > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > > > > > > > > > -- > Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) > Canada->Montreal Cell: +1 (514) 924 2012 > Cell: +1 (514) 924 2012 > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > From Michel.Audette at medizin.uni-leipzig.de Thu Aug 31 02:58:23 2006 From: Michel.Audette at medizin.uni-leipzig.de (Audette, Michel) Date: Thu, 31 Aug 2006 08:58:23 +0200 Subject: [MINC-users] MINC and 64-bit compilation In-Reply-To: <47949D86-4E90-4FF2-BD2C-C6B97BAFFF4F@bic.mni.mcgill.ca> Message-ID: <160E3DD4FB702C4CB860C65186686E69D237E1@MRZS152229.medizin.uni-leipzig.de> I use it on 64-bit Suse 10 Linux. I haven't encountered any major bugs yet. Michel Michel Audette, Ph.D. Innovation Center Computer Assisted Surgery (ICCAS) Philipp-Rosenthal-Strasse 55 Leipzig, Germany Phone: ++49 (0) 341 / 97 - 1 20 13 Fax: ++49 (0) 341 / 97 - 1 20 09 -----Original Message----- From: minc-users-bounces at bic.mni.mcgill.ca [mailto:minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Jason Lerch Sent: August 30, 2006 7:26 PM To: MINC users mailing list Subject: Re: [MINC-users] MINC and 64-bit compilation MINC itself is 64-bit clean now. Some of the surrounding applications likely still have a few bugs lurking in them, most prevalently in ParseArgv calls. I don't know of anyone who has compiled it 64 bit on PowerPC. But 64 bit IRIX (both gcc and MipsPro compilers) and amd64 versions are in use in different places. Hope this helps, Jason On 30-Aug-06, at 1:21 PM, Sean McBride wrote: > Hi all, > > Is MINC (1 or 2) 64 bit clean? That is, does it work correctly if > compiled in an environment where pointers are 64 bit? Even more > specifically, I am most interested in the LP64 data model, shown here: > > 64bitPorting/ > transition/chapter_3_section_3.html> > > I'd be interested in hearing from anyone that's built MINC on any > 64 bit OS. > > Thanks! > > -- > ____________________________________________________________ > Sean McBride, B. Eng sean at rogue-research.com > Rogue Research www.rogue-research.com > Mac Software Developer Montr?al, Qu?bec, Canada > > > > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users _______________________________________________ MINC-users at bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users From Michel.Audette at medizin.uni-leipzig.de Thu Aug 31 10:33:44 2006 From: Michel.Audette at medizin.uni-leipzig.de (Audette, Michel) Date: Thu, 31 Aug 2006 16:33:44 +0200 Subject: [MINC-users] Philips dcm2mnc failure References: <160E3DD4FB702C4CB860C65186686E69D237E1@MRZS152229.medizin.uni-leipzig.de> Message-ID: <160E3DD4FB702C4CB860C65186686E69AC3B3A@MRZS152229.medizin.uni-leipzig.de> Hi everyone, I still get the occasional Philips DICOM failure... See below: icaw164201:/home/maudette/data/ENT_data # dcm2mnc Schlossmacher_Marita/* Schlossmacher_Marita_mnc Checking file types... File Schlossmacher_Marita/dicom/SCH_DEL_HUMAN_335.dcm appears to be DICOM (CD/Export). Parsing 846 files |<---------------------->WARNING: Can't find Philips slice count WARNING: Can't find Philips slice index WARNING: Can't find Philips slice count ... WARNING: Can't find Philips slice count WARNING: Can't find Philips slice index ->WARNING: Can't find Philips private creator ID. ... WARNING: Can't find Philips slice count WARNING: Can't find Philips slice index -> WARNING: Can't find Philips private creator ID. WARNING: calculated slice width (0.4499999490) disagrees with file's slice width (0.4499512000) Error parsing file 'Schlossmacher_Marita/Schlossmacher_Marita_0.dcm' during 2nd pass. -Creating minc file |<-- (then nothing... quits without producing a mnc volume). I've ascertained that it works on some other Philips data from another scanner. Not sure why it quits here on the 2nd pass. Any suggestions for debugging this? Michel Michel Audette, Ph.D. Innovation Center Computer Assisted Surgery (ICCAS) Philipp-Rosenthal-Strasse 55 Leipzig, Germany Phone: ++49 (0) 341 / 97 - 1 20 13 Fax: ++49 (0) 341 / 97 - 1 20 09 From a.janke at gmail.com Thu Aug 31 11:40:52 2006 From: a.janke at gmail.com (Andrew Janke) Date: Thu, 31 Aug 2006 11:40:52 -0400 Subject: [MINC-users] Minctools on MAC OS 10.3 In-Reply-To: References: Message-ID: If you mean ParseArgv.pm it is on CPAN. (www.cpan.org) a On 8/30/06, Paul GRAVEL wrote: > Hi Andrew, > > I did copy the script but when I run it, it returns with the error: > > Can't locate ParseArgs.pm > > I had the same problem with Startup.pm & JobControl.pm but I found the > files under /usr/local/mni/lib/mni_autoreg, and I modified the PERL5LIB > variable accordingly. However, I looked on the MAC for the ParseArgs.pm > file, but couldn't find it. I also looked in some directories on shadow > but no luck. > > Can I just copy this file from shadow, and if so, where would it be > located? > > Thank you very much again. > > Best Regards, > > Paul > > On Tue, 29 Aug 2006, Andrew Janke wrote: > > > Paul, > > > > These two are just perl scripts, you should be able to just take a copy of them. > > > > > > a > > > > On 8/10/06, Paul GRAVEL wrote: > > > Thank you very much Andrew, it's working. > > > > > > Now, is there any way to install stx_segment and mritopet > > > on a MAC? > > > > > > Regards, > > > > > > Paul > > > > > > On Fri, 28 Jul 2006, Andrew Janke wrote: > > > > > > > > I need to install the minctools on a MAC running OS 10.3.9. I am > > > > > downloading the file from: > > > > > http://packages.bic.mni.mcgill.ca/osx-10.3/ > > > > > > > > > > Once the installation of the packages is done, should everything be > > > > > running smoothly, or do I need to install other packages, e.g. GLUT, > > > > > before being able to run programs such as Display? > > > > > > > > There are still a few things that have to be done by hand. :( THis includes: > > > > > > > > 1. Install X11 (if not already -- usually it is). > > > > 2. install netpbm via fink > > > > 3. install mni_perllib in the usual fashion > > > > 4. install GetOpt::Tabular from CPAN. > > > > > > > > Besides that, update your PATH and things should be good. > > > > > > > > > > > > a > > > > _______________________________________________ > > > > MINC-users at bic.mni.mcgill.ca > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > > > > > > > > > > > > > > > -- > > Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) > > Canada->Montreal Cell: +1 (514) 924 2012 > > Cell: +1 (514) 924 2012 > > _______________________________________________ > > MINC-users at bic.mni.mcgill.ca > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > > > > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users > -- Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) Canada->Montreal Cell: +1 (514) 924 2012 From jason at bic.mni.mcgill.ca Thu Aug 31 11:47:22 2006 From: jason at bic.mni.mcgill.ca (Jason Lerch) Date: Thu, 31 Aug 2006 11:47:22 -0400 Subject: [MINC-users] Minctools on MAC OS 10.3 In-Reply-To: References: Message-ID: <44F7048A.5060807@bic.mni.mcgill.ca> Andrew Janke wrote: >If you mean ParseArgv.pm it is on CPAN. (www.cpan.org) > > > ParseArgs.pm, Startup.pm and JobControl.pm are all the older versions of Getopt::Tabular and the mni_perllib. They are being phased out - but for the moment you can find a copy on the MNI machines here: /data/sendai/sendai1/quarantine/extern/lib/perl_site/ Later, Jason >a > >On 8/30/06, Paul GRAVEL wrote: > > >>Hi Andrew, >> >>I did copy the script but when I run it, it returns with the error: >> >>Can't locate ParseArgs.pm >> >>I had the same problem with Startup.pm & JobControl.pm but I found the >>files under /usr/local/mni/lib/mni_autoreg, and I modified the PERL5LIB >>variable accordingly. However, I looked on the MAC for the ParseArgs.pm >>file, but couldn't find it. I also looked in some directories on shadow >>but no luck. >> >>Can I just copy this file from shadow, and if so, where would it be >>located? >> >>Thank you very much again. >> >>Best Regards, >> >>Paul >> >>On Tue, 29 Aug 2006, Andrew Janke wrote: >> >> >> >>>Paul, >>> >>>These two are just perl scripts, you should be able to just take a copy of them. >>> >>> >>>a >>> >>>On 8/10/06, Paul GRAVEL wrote: >>> >>> >>>>Thank you very much Andrew, it's working. >>>> >>>>Now, is there any way to install stx_segment and mritopet >>>>on a MAC? >>>> >>>>Regards, >>>> >>>>Paul >>>> >>>>On Fri, 28 Jul 2006, Andrew Janke wrote: >>>> >>>> >>>> >>>>>>I need to install the minctools on a MAC running OS 10.3.9. I am >>>>>>downloading the file from: >>>>>>http://packages.bic.mni.mcgill.ca/osx-10.3/ >>>>>> >>>>>>Once the installation of the packages is done, should everything be >>>>>>running smoothly, or do I need to install other packages, e.g. GLUT, >>>>>>before being able to run programs such as Display? >>>>>> >>>>>> >>>>>There are still a few things that have to be done by hand. :( THis includes: >>>>> >>>>> 1. Install X11 (if not already -- usually it is). >>>>> 2. install netpbm via fink >>>>> 3. install mni_perllib in the usual fashion >>>>> 4. install GetOpt::Tabular from CPAN. >>>>> >>>>>Besides that, update your PATH and things should be good. >>>>> >>>>> >>>>>a >>>>>_______________________________________________ >>>>>MINC-users at bic.mni.mcgill.ca >>>>>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >>>>> >>>>> >>>>> >>>> >>>> >>>-- >>>Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/) >>>Canada->Montreal Cell: +1 (514) 924 2012 >>> Cell: +1 (514) 924 2012 >>>_______________________________________________ >>>MINC-users at bic.mni.mcgill.ca >>>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >>> >>> >>> >>_______________________________________________ >>MINC-users at bic.mni.mcgill.ca >>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users >> >> >> > > > >