[MINC-users] using bet with minc

[Anders Bertil Rodell]

Hi Soren Christensen

I have succesfully used bet with MINC  by 

switching to the right BET version based on type and sign
 
mincinfo -attvalue image:signtype file.mnc
mincinfo -vartype image file.mnc

running f.ex: 
bet_16SI infile.mnc outfile_basename -n -m [-f 0.4] to produce a mask

mincresample to mach original file 
mask the brain out.
 
Take a look at /users/rodell/Scripts/do_skullstrip    (back home in
Aarhus)

all the best Anders 

-- 
--
Anders Bertil Rodell M.Sc. C.S. PhD.     
Aarhus PET Centre, Aarhus University Hospital,
Norrebrogade 44, 8000 Aarhus C,
phone work:   +45 89 49 40 97  
mobile phone: +45 61 70 85 30 
email: rodell at pet.auh.dk