[MINC-users] putting an *.mnc into the talairach space

[Joongnam Yang]

Thanks, Jason,

but I am not sure I understand your comments.
Could you give me an example of 'mincresample' ?
My purpose is to turn amri.mnc into talairach space.
mritotal only gives me the transformation from mni to talairach.
I tried 
mincresample -talairach amri.mnc amri_tal.mnc
but when I looked at the amri.mnc and amri_tal.mnc, they were identical...

Nam.

>>> Jason Lerch <jason@bic.mni.mcgill.ca> 03/08/05 12:05 PM >>>

On Mar 8, 2005, at 11:43 AM, Joongnam Yang wrote:

> Thanks Phil.
>
> I actually thought about using 'resample', but when I use it, what do 
> I use
> for
> the '-like' option?

The sampling space you want - i.e. a MINC file with the right xyz 
dimensions and steps. The model you used to register towards with 
mritotal is often a good choice here.

Jason

>
> to resample amri.mnc into amri_tal.mnc, I would do,
>
> mincresample -like XXXX amri.mnc -transf amri_tal.xfm amri_tal.mnc
>
> in the above commands what should be XXXX?
>
> Nam.
>
>>>> "???" <hpkim@bme.hanyang.ac.kr> 03/07/05 7:32 PM >>>
> You should actually 'resample' the original volume with the transform 
> matrix
> using mincresample program.
>
> http://wiki.bic.mni.mcgill.ca/index.php/MincresampleManPage
>
> Regards,
> Phil.
>
> *------------------------------------------------*
> Hyun-Pil Kim,
> Computational Neuroimage Analysis Lab., Dept. of Biomedical 
> Engineering,
> Hanyang Univ.
> Sungdong P.O. Box 55, Seoul, 133-605, KOREA
> Tel: +82-2-2290-0697; FAX: +82-2-2296-5943
> Mobile: +82-19-286-0485
> E-mail: hpkim at ihanyang.ac.kr; aimtop77 at empal.com
> *------------------------------------------------*
>
>
> |-----Original Message-----
> |From: minc-users-admin@bic.mni.mcgill.ca [mailto:minc-users-
> |admin@bic.mni.mcgill.ca] On Behalf Of Joongnam Yang
> |Sent: Tuesday, March 08, 2005 9:02 AM
> |To: bert@bic.mni.mcgill.ca
> |Cc: minc-users@bic.mni.mcgill.ca
> |Subject: Re: [MINC-users] putting an *.mnc into the talairach space
> |
> |Thanks for the info.
> |if I do,
> |mritotal amri.mnc amri_tal.xfm,
> |it gives me the talairach transform file, but it does not actually
> |change the input volume "amri.mnc".
> |
> |Is there a way of transforming the input mnc volume into another mnc
> |file using the transform file?
> |
> |Nam.
> |
> |>>> Robert VINCENT <bert@bic.mni.mcgill.ca> 03/07/05 4:33 PM >>>
> |Hi Nam,
> |
> |Take a look at the mni_autoreg package:
> |
> |http://wiki.bic.mni.mcgill.ca/index.php/mni_autoreg
> |
> |	-bert
> |
> |On Mon, 7 Mar 2005, Joongnam Yang wrote:
> |
> |> Hi All,
> |>
> |> I have amri.mnc in native space.
> |> I want to turn it into one in talairach space.
> |> Would someone let me know how to do it?
> |>
> |> Nam.
> |> _______________________________________________
> |> MINC-users@bic.mni.mcgill.ca
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> |>
> |
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