[MINC-users] other models

[Andrew Janke]

You will need to resample the masks to the icbm space.

ie:

    mincresample -like <icbm_model.mnc> average_305_mask.mnc icbm_model_mask.mnc


a


On Thu, 11 Nov 2004, Daniel Schwarz wrote:

> I used the average_305 masks, but did not the resampling as I guess that the 
> world coordinates stay the same. ...or am I wrong?
>
> Daniel Schwarz
>
>
> Andrew Janke napsal(a):
>
>> On Tue, 2 Nov 2004, Daniel Schwarz wrote:
>> 
>>> if I want to register my data with another model than the average_305, 
>>> what steps do I have to do?
>>> I downloaded ICBM_template.mnc and ran the script make_model, which 
>>> crashed due to missing mask file for this template. Do I have to create 
>>> the mask file for ICBM_template (or any others) or is it somewhere 
>>> available? I guess I will also need the headmask for later nonlinear 
>>> registration...
>> 
>> 
>> the make_model script requires two masks. a cortex mask (<model>_mask.mnc) 
>> and a headmask for possible non-linear fitting (<model>_headmask.mnc>).
>> 
>> You should be able to mincresample the average_305 masks for your purposes 
>> as these two models are essentially in the same space albeit with different 
>> sampling.
>> 
>> 
>> -- 
>> Andrew Janke (andrew_janke@iinet.net DOT au || www.cmr.uq.edu.au/~rotor) 
>> Australia->Brisbane            H: +61 7 3390 6332  || M: +61 4 2138 8581
>> _______________________________________________
>> MINC-users@bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
>
>

--
Andrew Janke (andrew_janke@iinet.net DOT au || www.cmr.uq.edu.au/~rotor) 
Australia->Brisbane            H: +61 7 3390 6332  || M: +61 4 2138 8581