[MINC-users] Shapoor from Dr. Bushnell's lab

[Jon Erik Ween]

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This will work if you have *.dcm files for a single series in a folder=20=

and the *.dcm files are named in the appropriate sequential order. Many=20=

indexing databases (such as the Oldenburg CTN) assigns random names to=20=

files, so they are concatenated correctly by dicom_to_minc. Using the=20
mklinks2 utility can help with the filename problem (as outlined on the=20=

(x)medcon website) but then, if you have a "smart" PACS that saves=20
space by concatenating different sequences into a single DICOM series,=20=

dicom_to_minc will not parse these correctly.

Jon

On Wednesday, October 1, 2003, at 04:20 PM, Jason Lerch wrote:

> Hello Shapoor,
>
> try:
>
> dicom_to_minc
>
> Cheers,
>
> Jason
>
> On Monday, September 29, 2003, at 11:01 AM, Shapoor wrote:
>
>> Hi,
>>
>> =A0
>>
>> I have files that are in dicom format, I was wondering how can I=20
>> transfer them into minc format?
>>
>> =A0
>>
>> Thank you
>>
>> Shapoor
>>
>
>
> _______________________________________________
> MINC-users@bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
>
Jon Erik Ween, MD, MS
Assistant Professor
Cognitive and Cerebrovascular Neurology
Director, Stroke Program
Loma Linda University

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This will work if you have *.dcm files for a
<underline>single</underline> series in a folder and the *.dcm files
are named in the appropriate sequential order. Many indexing databases
(such as the Oldenburg CTN) assigns random names to files, so they are
concatenated correctly by dicom_to_minc. Using the mklinks2 utility
can help with the filename problem (as outlined on the (x)medcon
website) but then, if you have a "smart" PACS that saves space by
concatenating different sequences into a single DICOM series,
dicom_to_minc will not parse these correctly.


Jon


On Wednesday, October 1, 2003, at 04:20 PM, Jason Lerch wrote:


<excerpt>Hello Shapoor,


try:


dicom_to_minc


Cheers,


Jason


On Monday, September 29, 2003, at 11:01 AM, Shapoor wrote:


<excerpt>Hi,


=A0


I have files that are in dicom format, I was wondering how can I
transfer them into minc format?


=A0


Thank you


Shapoor


</excerpt>


_______________________________________________

MINC-users@bic.mni.mcgill.ca

http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users



</excerpt>Jon Erik Ween, MD, MS

Assistant Professor

Cognitive and Cerebrovascular Neurology

Director, Stroke Program

Loma Linda University


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