[MINC-development] location of avg250

Andrew Janke a.janke at gmail.com
Mon May 20 18:56:29 EDT 2024 

Hi all,

Everything I have is in

   /home/bic/rotor/data

>From a look around in there, I think it has what louis is looking for.

login1:*data*$ ls

ADNI-data01  als  avgbrain  icbm_recovery  jacob_atlas.obj  mni-models
ms-mni-bu  prism  symatlas  tle



login1:*data*$ ls avgbrain/*/*

avgbrain/avgbrain1/atlas:

talairach  wolforth_atlas


avgbrain/avgbrain1/brain:

autoreg     brain-models  male-female-diff     males-low-Z  ms-normal
native-xfm  temp-work-files-not-to-delete

brain_mask  images   males-females-low-Z  manreg     native     old_images


avgbrain/avgbrain1/vasco:

avgbrain.fx


avgbrain/avgbrain2/brain:

auto-corr  brain-models  manreg  native


avgbrain/avgbrain2/vasco:

brain_mask.mnc.Z     feature_t1.mnc.Z       kollokian_vasco_t1.mnc.Z
phantom10.mnc.Z
  t1.mnc.gz

brain_mask_t.mnc.gz     feature_t2.mnc.Z       kollokian_vasco_t1tal.log
phantom_doc.ps    t2.mnc.gz

brain_vein_dura_mask.mnc.Z  fill_pd       kollokian_vasco_t1tal.xfm
phantom_pd.mnc.Z  vasco_label.tag

classified_brain_t.mnc.gz   fill_t1       kollokian_vasco_t2.mnc.Z
phantom_t1.mnc.Z  vasco_stx_label.tag

classified_t.mnc.gz     fill_t2       make_brain_phantom.txt
phantom_t2.mnc.Z  vasco_stx.tag

feature_pd.mnc.Z     kollokian_vasco_pd.mnc.Z  pd.mnc.gz readme.1st
vasco_t2-t1.tag

Thanks

a



On Thu, 16 May 2024 at 01:22, Louis Collins, Dr. <louis.collins at mcgill.ca>
wrote:

> HI all,
>
> I’ve checked again to try to find the original  average of 250 manually
> registered T1w 1.5T (Philips) MRIs that are described in Alan’s 1992
> abstract.
>
> Andrew - if you have time, could you poke around /data/ipl/ipl*/rotor ?  I
> don’t have permissions to do so.
>
> I have managed to find a bunch of other templates and made a slide if
> anyone is interested. I’d love to add the avg250.mnc to complete the
> collection.
>
> -Louis
>
>
> > On May 14, 2024, at 12:00, minc-development-request at bic.mni.mcgill.ca
> wrote:
> >
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> >   1. Re: location of avg250 ? (Andrew Janke)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Tue, 14 May 2024 20:08:47 +1000
> > From: Andrew Janke <a.janke at gmail.com>
> > To: "MINC development discussion & planning"
> >        <minc-development at bic.mni.mcgill.ca>
> > Subject: Re: [MINC-development] location of avg250 ?
> > Message-ID:
> >        <
> CAG0CB20KzGEPOPcNbb4BE9YKOB7MeNphtiNRbG3wxTkW2vsXMA at mail.gmail.com>
> > Content-Type: text/plain; charset="utf-8"
> >
> > Afternoon/morning/evening all,
> >
> >
> > Louis, I did go through all the old archives when I was helping JF clean
> up
> > the original shadow server before decom and movement to the first Linux
> ipl
> > drives we built. Would have been around 2004?
> >
> > As part of this, I did find all the original models, source data and some
> > of the scripts including the 250, the data was in a word, amusing. By
> 2006
> > standards, huge artifacts, but yet built a great model. I do wonder what
> > the 2024 young pups would think. ?
> >
> > So, the data will be in one of the /data/ipl/iplxx drives in a rotor
> share.
> > If I can recall my password I could take a crack at finding them if they
> > haven't been reassigned.
> >
> > Thanks
> >
> >
> > a
> >
> > On Tue, 14 May 2024, 01:33 Gabriel Allan Devenyi, Dr, <
> > gabriel.devenyi at mcgill.ca> wrote:
> >
> >> According to
> >>
> https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fen.wikibooks.org%2Fwiki%2FMINC%2FAtlases%2FAtlases%2FHistory%23Average_250_T1_model&data=05%7C02%7Clouis.collins%40mcgill.ca%7C8f7d1ca0f52f4fc9cf0808dc742eee2d%7Ccd31967152e74a68afa9fcf8f89f09ea%7C0%7C0%7C638512992120641930%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=9Zj%2BSErYEymKtnZbkT5sHAjLmo%2B4W%2FNsiR3XZcKcMpg%3D&reserved=0
> <https://en.wikibooks.org/wiki/MINC/Atlases/Atlases/History#Average_250_T1_model>
> >>
> >>> This original MNI-space model has never been officially released from
> >> the MNI.
> >>
> >> This might make finding it difficult.
> >>
> >> ________________________________________
> >> From: MINC-development <minc-development-bounces at bic.mni.mcgill.ca> on
> >> behalf of Louis Collins, Dr. <louis.collins at McGill.Ca>
> >> Sent: May 13, 2024 08:36
> >> To: minc-development at bic.mni.mcgill.ca
> >> Subject: [MINC-development] location of avg250 ?
> >>
> >> Hi all,
> >>
> >> I was looking at our history of minc stereotaxic MRI average
> templates.  I
> >> can?t seem to find the avg250.mnc (mni250.mnc ?) that is described in
> >>        Evans, A., Collins, D. L., & Milner, B. (1992). An MRI-based
> >> stereotaxic atlas from 250 young normal subjects. Paper presented at the
> >> Society for Neuroscience.
> >>
> >> Anyone have any ideas where I can find it?
> >>
> >> -Louis
> >>
> >>
> >> _______________________________________________
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> >> MINC-development at bic.mni.mcgill.ca
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> >>
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