[MINC-development] mnc2nii failure

[Cecile Madjar]

Hi Gabriel,

Thank you for the pointers. I created a Github issue with all the details
you mentioned.


On Fri, Jun 7, 2019 at 12:21 PM Gabriel Allan Devenyi, Dr <
gabriel.devenyi at mcgill.ca> wrote:

> Hi,
>
> Can you please open up a github issue with full details (with verbose
> turned on). As well as the minchistory/mincheaders for working vs
> non-working conversions.
>
>
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> Affiliate, Department of Psychiatry
> McGill University
> t: 514.761.6131x4781
> e: gabriel.devenyi at mcgill.ca
>
>
> On Tue, 4 Jun 2019 at 12:45, Cecile Madjar <cecile.madjar at mcin.ca> wrote:
>
>> Hi MINC developers,
>>
>> I just QC'ed some images that went through mnc2nii and it results in
>> either flipped NIfTI files or empty NIfTI files (mainly for 4D datasets
>> apparently).
>>
>> I am using the latest MINC toolkit version but I believe mnc2nii has not
>> be worked on in a while if I am not mistaken.
>>
>> We need mnc2nii to work to disseminate data that have been through a
>> defacing algorithm that ran on the MINC files. Would it be possible to
>> please fix this issue?
>>
>> Additionally, when converting DWI MINC files into NIfTI files, two
>> additional files (.bvec and .bval) should be created to store the direction
>> information.
>>
>> I can provide test MINC datasets on different modalities.
>>
>> Let me know.
>> Thank you!
>>
>> Cécile Madjar
>> MCIN lab
>>
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